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Open data and digital morphology

Authors :
Timothy B. Rowe
Zongjun Yin
Chris Stringer
Thomas G. Davies
Brian D. Metscher
Alistair R. Evans
Stephen Wroe
John R. Hutchinson
Russell J. Garwood
Nathan Jeffery
Jesús Marugán-Lobón
Lawrence M. Witmer
Adam P. Summers
Selena Y. Smith
Emily J. Rayfield
Philip C. J. Donoghue
Peter L. Falkingham
Martin Rücklin
Stephan Lautenschlager
Maeva J. Orliac
Vera Weisbecker
Stig A. Walsh
Imran A. Rahman
Mark D. Sutton
Xi Ping Dong
Paul O'Higgins
Stefan Bengtson
Marcelo R. Sánchez-Villagra
Renaud Lebrun
Robert J. Asher
Neil H. Shubin
John A. Cunningham
Paul M. Barrett
Philip G. Cox
Carlos Martínez-Pérez
Matt Friedman
José Braga
Doug M. Boyer
J. Matthias Starck
Zerina Johanson
Jen A. Bright
Leon P. A. M. Claessens
Anjali Goswami
Roger B. J. Benson
Karl T. Bates
Natural Environment Research Council (NERC)
School of Earth Sciences [Bristol]
University of Bristol [Bristol]
Oxford University Museum of Natural History
University of Oxford [Oxford]
School of Geography, Earth and Environmental Sciences [Birmingham]
University of Birmingham [Birmingham]
Museum of Zoology, University of Cambridge
Department of Earth Sciences [NHM London] (DES-NHM)
The Natural History Museum [London] (NHM)
Institute of Ageing and Chronic Disease
University of Liverpool
Department of Palaeobiology [Stockholm]
Swedish Museum of Natural History (NRM)
Department of Earth Sciences [Oxford]
Department of Evolutionary Anthropology Durham
Duke University [Durham]
Anthropologie Moléculaire et Imagerie de Synthèse (AMIS)
Université Toulouse III - Paul Sabatier (UT3)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)
School of Geosciences, University of South Florida, Florida, Tampa, USA
University of South Florida [Tampa] (USF)
College of the Holy Cross
Departments of Archaeology [York] (BioArch)
University of York [York, UK]
School of Earth and Space Sciences [Beijing]
Peking University [Beijing]
School of Biological Sciences, VIC
Monash University
Faculty of Science/School of Natural Sciences and Psychology
Liverpool John Moores University (LJMU)
Department of Earth and Environmental Sciences [Ann Arbor]
University of Michigan [Ann Arbor]
University of Michigan System-University of Michigan System
Museum of Paleontology [Ann Arbor]
School of Earth and Environmental Sciences [Manchester] (SEES)
University of Manchester [Manchester]
Department of Genetics, Evolution and Environment, Centre for Biodiversity and Environment, Research
University College of London [London] (UCL)
Structure and Motion Laboratory
Royal Veterinary College
Institut des Sciences de l'Evolution de Montpellier (UMR ISEM)
École pratique des hautes études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche pour le développement [IRD] : UR226
Unidad de Paleontologia, Departamento de Biologia
Facultad de Ciencias, Universidad Autonoma de Madrid
Department of theoretical biology, University of Vienna
Jackson School of Geosciences (JSG)
University of Texas at Austin [Austin]
Naturalis Biodiversity Center [Leiden]
Paläontologisches Institut und Museum der Universität Zürich
Paläontologisches Institut und Museum der Univer sität Zürich
University of Chicago
Oxford University Museum of Natural History (OUMNH)
University of Oxford
Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut de recherche pour le développement [IRD] : UR226-Centre National de la Recherche Scientifique (CNRS)
Universität Wien
Source :
Davies, T, Rahman, I, Lautenschlager, S, Cunningham, J A, Asher, R J, Barrett, P M, Bates, K T, Bengtson, S, Benson, R B J, Boyer, D M, Braga, J, Bright, J A, Claessens, L P A M, Cox, P G, Dong, X-P, Evans, A R, Falkingham, P L, Friedman, M, Garwood, R J, Goswami, A, Hutchinson, J R, Jeffery, N S, Johanson, Z, Lebrun, R, Martínez-Pérez, C, Marugán-Lobón, J, O'Higgins, P M, Metscher, B, Orliac, M, Rowe, T B, Rücklin, M, Sánchez-Villagra, M R, Shubin, N H, Smith, S Y, Starck, J M, Stringer, C, Summers, A P, Sutton, M D, Walsh, S A, Weisbecker, V, Witmer, L M, Wroe, S, Yin, Z, Rayfield, E J & Donoghue, P C J 2017, ' Open data and digital morphology ', Proceedings of the Royal Society B: Biological Sciences, vol. 284, no. 1852, 20170194 . https://doi.org/10.1098/rspb.2017.0194, Proceedings of the Royal Society B: Biological Sciences, Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2017, 284 (1852), ⟨10.1098/rspb.2017.0194⟩, PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Proceedings of the Royal Society B, Proceedings of the Royal Society B: Biological Sciences, 2017, 284 (1852), ⟨10.1098/rspb.2017.0194⟩, Proceedings of the Royal Society of London: Biological Sciences, Davies, T G, Rahman, I, Lautenschlager, S, Cunningham, J, Asher, R J, Barrett, P M, Bates, K T, Bengtson, S, Benson, R B J, Boyer, D M, Braga, J, Bright, J A, Claessens, L P A M, Cox, P G, Dong, X-P, Evans, A R, Falkingham, P L, Friedman, M, Garwood, R, Goswami, A, Hutchinson, J R, Jeffery, N S, Johanson, Z, Lebrun, R, Martínez-Pérez, C, Marugán-Lobón, J, O’Higgins, P M, Metscher, B, Orliac, M, Rowe, T B, Rücklin, M, Sánchez-Villagra, M R, Shubin, N H, Smith, S Y, Matthias Starck, J, Stringer, C B, Summers, A P, Sutton, M D, Walsh, S A, Weisbecker, V, Witmer, L M, Wroe, S, Yin, Z, Rayfield, E J & Donoghue, P C J 2017, ' Open data and digital morphology ', Royal Society of London. Philosophical Transactions B. Biological Sciences . https://doi.org/10.1098/rspb.2017.0194
Publication Year :
2017

Abstract

International audience; Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.

Details

ISSN :
14712954 and 09628452
Volume :
284
Issue :
1852
Database :
OpenAIRE
Journal :
Proceedings of the Royal Society B: Biological Sciences
Accession number :
edsair.doi.dedup.....39e3cee3b2a6dd0c72343c2d39b9cb45
Full Text :
https://doi.org/10.1098/rspb.2017.0194