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Strap associates with Csde1 and affects expression of select Csde1-bound transcripts
- Source :
- PLoS ONE, PLoS One, 13, PLoS One, 13, 8, PLoS One, 13(8). Public Library of Science, PLoS ONE, Vol 13, Iss 8, p e0201690 (2018), PLoS ONE, 13(8), PLoS ONE, 13(8):e0201690. Public Library of Science
- Publication Year :
- 2018
-
Abstract
- Erythropoiesis is regulated at many levels, including control of mRNA translation. Changing environmental conditions, such as hypoxia or the availability of nutrients and growth factors, require a rapid response enacted by the enhanced or repressed translation of existing transcripts. Cold shock domain protein e1 (Csde1/Unr) is an RNA-binding protein required for erythropoiesis and strongly upregulated in erythroblasts relative to other hematopoietic progenitors. The aim of this study is to identify the Csde1-containing protein complexes and investigate their role in post-transcriptional expression control of Csde1-bound transcripts. We show that Serine/Threonine kinase receptor-associated protein (Strap/Unrip), was the protein most strongly associated with Csde1 in erythroblasts. Strap is a WD40 protein involved in signaling and RNA splicing, but its role when associated with Csde1 is unknown. Reduced expression of Strap did not alter the pool of transcripts bound by Csde1. Instead, it altered the mRNA and/or protein expression of several Csde1-bound transcripts that encode for proteins essential for translational regulation during hypoxia, such as Hmbs, eIF4g3 and Pabpc4. Also affected by Strap knockdown were Vim, a Gata-1 target crucial for erythrocyte enucleation, and Elavl1, which stabilizes Gata-1 mRNA. The major cellular processes affected by both Csde1 and Strap were ribosome function and cell cycle control.
- Subjects :
- RNA, Messenger/genetics
0301 basic medicine
Carrier Proteins/genetics
Erythroblasts
Physiology
Protein Expression
lcsh:Medicine
Gene Expression
Biochemistry
Mice
Sequencing techniques
0302 clinical medicine
Animal Cells
Red Blood Cells
Translational regulation
Gene expression
Medicine and Health Sciences
Erythropoiesis
Cell Cycle and Cell Division
lcsh:Science
Regulation of gene expression
Gene knockdown
Multidisciplinary
DNA-Binding Proteins/metabolism
Messenger RNA
Cell Cycle
RNA-Binding Proteins
RNA sequencing
Translation (biology)
Cell Differentiation
Cell biology
DNA-Binding Proteins
Nucleic acids
Cell Processes
030220 oncology & carcinogenesis
Gene Knockdown Techniques
Cellular Types
Research Article
Protein Binding
Bone Marrow Cells
Biology
Research and Analysis Methods
03 medical and health sciences
All institutes and research themes of the Radboud University Medical Center
Erythroblasts/cytology
Gene Expression and Vector Techniques
Genetics
Erythrocyte enucleation
Animals
Humans
RNA, Messenger
Ribosomes/metabolism
Molecular Biology Techniques
Molecular Biology
Molecular Biology Assays and Analysis Techniques
Blood Cells
lcsh:R
Biology and Life Sciences
Cell Biology
EIF4G3
Hematopoiesis
030104 developmental biology
HEK293 Cells
Gene Expression Regulation
RNA
Messenger/genetics
lcsh:Q
Protein Translation
RNA-Binding Proteins/metabolism
Carrier Proteins
Physiological Processes
Ribosomes
Nanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19]
Subjects
Details
- Language :
- English
- ISSN :
- 19326203
- Database :
- OpenAIRE
- Journal :
- PLoS ONE, PLoS One, 13, PLoS One, 13, 8, PLoS One, 13(8). Public Library of Science, PLoS ONE, Vol 13, Iss 8, p e0201690 (2018), PLoS ONE, 13(8), PLoS ONE, 13(8):e0201690. Public Library of Science
- Accession number :
- edsair.doi.dedup.....3aacc4c3041c401a1a3ce67843e99270