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Supplementary Methods from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape

Supplementary Methods from Sarcomatoid Renal Cell Carcinoma Has a Distinct Molecular Pathogenesis, Driver Mutation Profile, and Transcriptional Landscape

Authors :
Kanishka Sircar
Ken Chen
Kenna Shaw
Gordon Mills
Ignacio Wistuba
Bogdan Czerniak
Marileila Varella-Garcia
Keith Baggerly
Federico Monzon
Christopher Wood
Nizar Tannir
Pheroze Tamboli
Jaime Rodriguez Canales
Chi-Wan Chow
Eric Jonasch
Patricia Trevisan
Fumi Kawakami
Aron Joon
Chad Creighton
Jose Karam
Bo Peng
Tae Beom Kim
Zixing Wang
Publication Year :
2023
Publisher :
American Association for Cancer Research (AACR), 2023.

Abstract

Supplemental Methods 1. Exome sequencing pipeline Supplemental Methods 2. RNA seq pipeline Supplemental Methods 3. DNA methylation profiling pipeline Supplemental Methods 4. Fluorescence in situ hybridization Supplemental Methods 5. TCGA samples with possible copy neutral loss of heterozygosity in 3p21 and 3p25 regions

Details

Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....3b3d013e98793a1fe684885627e5447c
Full Text :
https://doi.org/10.1158/1078-0432.22468035