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Two-stage framework for optic disc localization and glaucoma classification in retinal fundus images using deep learning
- Source :
- BMC Medical Informatics and Decision Making, Vol 19, Iss 1, Pp 1-16 (2019), BMC Medical Informatics and Decision Making
- Publication Year :
- 2019
- Publisher :
- BMC, 2019.
-
Abstract
- With the advancement of powerful image processing and machine learning techniques, CAD has become ever more prevalent in all fields of medicine including ophthalmology. Since optic disc is the most important part of retinal fundus image for glaucoma detection, this paper proposes a two-stage framework that first detects and localizes optic disc and then classifies it into healthy or glaucomatous. The first stage is based on RCNN and is responsible for localizing and extracting optic disc from a retinal fundus image while the second stage uses Deep CNN to classify the extracted disc into healthy or glaucomatous. In addition to the proposed solution, we also developed a rule-based semi-automatic ground truth generation method that provides necessary annotations for training RCNN based model for automated disc localization. The proposed method is evaluated on seven publicly available datasets for disc localization and on ORIGA dataset, which is the largest publicly available dataset for glaucoma classification. The results of automatic localization mark new state-of-the-art on six datasets with accuracy reaching 100% on four of them. For glaucoma classification we achieved AUC equal to 0.874 which is 2.7% relative improvement over the state-of-the-art results previously obtained for classification on ORIGA. Once trained on carefully annotated data, Deep Learning based methods for optic disc detection and localization are not only robust, accurate and fully automated but also eliminates the need for dataset-dependent heuristic algorithms. Our empirical evaluation of glaucoma classification on ORIGA reveals that reporting only AUC, for datasets with class imbalance and without pre-defined train and test splits, does not portray true picture of the classifier's performance and calls for additional performance metrics to substantiate the results.<br />16 Pages, 10 Figures
- Subjects :
- FOS: Computer and information sciences
Computer Science - Machine Learning
020205 medical informatics
genetic structures
Computer science
Computer Vision and Pattern Recognition (cs.CV)
Computer Science - Computer Vision and Pattern Recognition
Glaucoma
02 engineering and technology
Convolutional neural network
Machine Learning (cs.LG)
0302 clinical medicine
Minimum bounding box
Medical image analysis
0202 electrical engineering, electronic engineering, information engineering
Diagnosis, Computer-Assisted
030212 general & internal medicine
Ground truth
Health Policy
Image and Video Processing (eess.IV)
Computer Science Applications
Computer aided diagnosis
medicine.anatomical_structure
lcsh:R858-859.7
Glaucoma detection
Research Article
Optic disc
Fundus Oculi
Optic Disk
Health Informatics
Image processing
lcsh:Computer applications to medicine. Medical informatics
03 medical and health sciences
Image Interpretation, Computer-Assisted
Machine learning
FOS: Electrical engineering, electronic engineering, information engineering
medicine
Humans
business.industry
Deep learning
Correction
Pattern recognition
Electrical Engineering and Systems Science - Image and Video Processing
medicine.disease
Optic disc localization
Computer-aided diagnosis
Artificial intelligence
business
Subjects
Details
- Language :
- English
- ISSN :
- 14726947
- Volume :
- 19
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- BMC Medical Informatics and Decision Making
- Accession number :
- edsair.doi.dedup.....3fee4ec60b018dacb6f8d2265f48960c
- Full Text :
- https://doi.org/10.1186/s12911-019-0842-8