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Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project

Authors :
Carla Fornari
Lars Pedersen
Fleur Mougin
Paul Avillach
Carlo Giaquinto
Ron M. C. Herings
Giampiero Mazzaglia
Gianluca Trifirò
Marius Fieschi
Mariam Molokhia
Antoine Pariente
Johan van der Lei
Jean-Charles Dufour
Martijn J. Schuemie
Preciosa M. Coloma
Rosa Gini
Miriam C. J. M. Sturkenboom
Annie Fourrier-Réglat
Mougin, Fleur
INSERM U897
INSERM
ISPED-ISPED
Génétique, Reproduction et Développement (GReD)
Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS)
Centre de Recherche en Nutrition Humaine
Génétique, Reproduction et Développement (GReD )
Génétique et Ecophysiologie de la qualité des agrumes (GEQA)
Institut National de la Recherche Agronomique (INRA)
PHARMO Institute for Drug Outcomes Research
Department of Health Policy & Management
Erasmus University Medical Centre
Non-Communicable Disease Epidemiology Unit
London School of Hygiene and Tropical Medicine (LSHTM)
CIC - Bordeaux
Université Bordeaux Segalen - Bordeaux 2-CHU Bordeaux [Bordeaux]-Institut National de la Santé et de la Recherche Médicale (INSERM)
Laboratoire d'Enseignement et de Recherche sur le Traitement de l'Information Médicale (LERTIM)
Université de la Méditerranée - Aix-Marseille 2
Erasmus University Medical Center [Rotterdam] (Erasmus MC)
Department of medical informatics
Génétique, Reproduction et Développement - Clermont Auvergne (GReD)
Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Clermont Auvergne (UCA)-Centre National de la Recherche Scientifique (CNRS)
Génétique, Reproduction et Développement - Clermont Auvergne (GReD )
Epidemiology and Data Science
Clinical pharmacology and pharmacy
Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Institut National de la Santé et de la Recherche Médicale (INSERM)
Medical Informatics
Avillach, P
Coloma, P
Gini, R
Schuemie, M
Mougin, F
Dufour, J
Mazzaglia, G
Giaquinto, C
Fornari, C
Herings, R
Molokhia, M
Pedersen, L
Fourrier Réglat, A
Fieschi, M
Sturkenboom, M
van der Lei, J
Pariente, A
Trifirò, G
Source :
Journal of the American Medical Informatics Association, Journal of the American Medical Informatics Association, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, BMJ Publishing Group, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, 20(1), 184-192. Oxford University Press, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Reglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifiro, G & consortium, E-A 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J-C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Réglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifirò, G & on behalf of the EU-ADR consortium 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases : the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933
Publication Year :
2013
Publisher :
HAL CCSD, 2013.

Abstract

OBJECTIVE: Data from electronic healthcare records (EHR) can be used to monitor drug safety, but in order to compare and pool data from different EHR databases, the extraction of potential adverse events must be harmonized. In this paper, we describe the procedure used for harmonizing the extraction from eight European EHR databases of five events of interest deemed to be important in pharmacovigilance: acute myocardial infarction (AMI); acute renal failure (ARF); anaphylactic shock (AS); bullous eruption (BE); and rhabdomyolysis (RHABD). DESIGN: The participating databases comprise general practitioners' medical records and claims for hospitalization and other healthcare services. Clinical information is collected using four different disease terminologies and free text in two different languages. The Unified Medical Language System was used to identify concepts and corresponding codes in each terminology. A common database model was used to share and pool data and verify the semantic basis of the event extraction queries. Feedback from the database holders was obtained at various stages to refine the extraction queries. MEASUREMENTS: Standardized and age specific incidence rates (IRs) were calculated to facilitate benchmarking and harmonization of event data extraction across the databases. This was an iterative process. RESULTS: The study population comprised overall 19 647 445 individuals with a follow-up of 59 929 690 person-years (PYs). Age adjusted IRs for the five events of interest across the databases were as follows: (1) AMI: 60-148/100 000 PYs; (2) ARF: 3-49/100 000 PYs; (3) AS: 2-12/100 000 PYs; (4) BE: 2-17/100 000 PYs; and (5) RHABD: 0.1-8/100 000 PYs. CONCLUSIONS: The iterative harmonization process enabled a more homogeneous identification of events across differently structured databases using different coding based algorithms. This workflow can facilitate transparent and reproducible event extractions and understanding of differences between databases.

Details

Language :
English
ISSN :
10675027 and 1527974X
Database :
OpenAIRE
Journal :
Journal of the American Medical Informatics Association, Journal of the American Medical Informatics Association, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, BMJ Publishing Group, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, 20(1), 184-192. Oxford University Press, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Reglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifiro, G & consortium, E-A 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J-C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Réglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifirò, G & on behalf of the EU-ADR consortium 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases : the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933
Accession number :
edsair.doi.dedup.....46fc1ed00971184501329ba00b6bf845
Full Text :
https://doi.org/10.1136/amiajnl-2012-000933⟩