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Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project
- Source :
- Journal of the American Medical Informatics Association, Journal of the American Medical Informatics Association, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, BMJ Publishing Group, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, 20(1), 184-192. Oxford University Press, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Reglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifiro, G & consortium, E-A 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J-C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Réglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifirò, G & on behalf of the EU-ADR consortium 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases : the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933
- Publication Year :
- 2013
- Publisher :
- HAL CCSD, 2013.
-
Abstract
- OBJECTIVE: Data from electronic healthcare records (EHR) can be used to monitor drug safety, but in order to compare and pool data from different EHR databases, the extraction of potential adverse events must be harmonized. In this paper, we describe the procedure used for harmonizing the extraction from eight European EHR databases of five events of interest deemed to be important in pharmacovigilance: acute myocardial infarction (AMI); acute renal failure (ARF); anaphylactic shock (AS); bullous eruption (BE); and rhabdomyolysis (RHABD). DESIGN: The participating databases comprise general practitioners' medical records and claims for hospitalization and other healthcare services. Clinical information is collected using four different disease terminologies and free text in two different languages. The Unified Medical Language System was used to identify concepts and corresponding codes in each terminology. A common database model was used to share and pool data and verify the semantic basis of the event extraction queries. Feedback from the database holders was obtained at various stages to refine the extraction queries. MEASUREMENTS: Standardized and age specific incidence rates (IRs) were calculated to facilitate benchmarking and harmonization of event data extraction across the databases. This was an iterative process. RESULTS: The study population comprised overall 19 647 445 individuals with a follow-up of 59 929 690 person-years (PYs). Age adjusted IRs for the five events of interest across the databases were as follows: (1) AMI: 60-148/100 000 PYs; (2) ARF: 3-49/100 000 PYs; (3) AS: 2-12/100 000 PYs; (4) BE: 2-17/100 000 PYs; and (5) RHABD: 0.1-8/100 000 PYs. CONCLUSIONS: The iterative harmonization process enabled a more homogeneous identification of events across differently structured databases using different coding based algorithms. This workflow can facilitate transparent and reproducible event extractions and understanding of differences between databases.
- Subjects :
- Databases, Factual
health care facilities, manpower, and services
International Cooperation
Information Storage and Retrieval
030204 cardiovascular system & hematology
computer.software_genre
[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI]
0302 clinical medicine
healthcare administrative databases, medical events
Health care
EPIDEMIOLOGY
Medicine
030212 general & internal medicine
Focus on Data Sharing
health care economics and organizations
ComputingMilieux_MISCELLANEOUS
OUTCOMES
ANAPHYLAXIS
Database
Incidence
Reference Standards
ACUTE MYOCARDIAL-INFARCTION, ACUTE KIDNEY INJURY, CORONARY-HEART-DISEASE, EMERGENCY-DEPARTMENT, RISK-FACTORS, EPIDEMIOLOGY, ANAPHYLAXIS, POPULATIONS, COUNTRIES, OUTCOMES
3. Good health
Europe
Identification (information)
Benchmarking
Anaphylactic shock
POPULATIONS
Medical emergency
Medical Record Linkage
COUNTRIES
[INFO.INFO-AI] Computer Science [cs]/Artificial Intelligence [cs.AI]
ACUTE MYOCARDIAL-INFARCTION
Medical Records Systems, Computerized
MEDLINE
ACUTE KIDNEY INJURY
Health Informatics
Harmonization
Objective data
03 medical and health sciences
health services administration
Pharmacovigilance
Product Surveillance, Postmarketing
Adverse Drug Reaction Reporting Systems
Humans
CORONARY-HEART-DISEASE
Adverse effect
business.industry
Information Dissemination
medicine.disease
Unified Medical Language System
EMERGENCY-DEPARTMENT
RISK-FACTORS
business
computer
Subjects
Details
- Language :
- English
- ISSN :
- 10675027 and 1527974X
- Database :
- OpenAIRE
- Journal :
- Journal of the American Medical Informatics Association, Journal of the American Medical Informatics Association, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, BMJ Publishing Group, 2013, 20 (1), pp.184-192. ⟨10.1136/amiajnl-2012-000933⟩, Journal of the American Medical Informatics Association, 20(1), 184-192. Oxford University Press, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Reglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifiro, G & consortium, E-A 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933, Avillach, P, Coloma, P M, Gini, R, Schuemie, M, Mougin, F, Dufour, J-C, Mazzaglia, G, Giaquinto, C, Fornari, C, Herings, R, Molokhia, M, Pedersen, L, Fourrier-Réglat, A, Fieschi, M, Sturkenboom, M, van der Lei, J, Pariente, A, Trifirò, G & on behalf of the EU-ADR consortium 2013, ' Harmonization process for the identification of medical events in eight European healthcare databases : the experience from the EU-ADR project ', Journal of the American Medical Informatics Association, vol. 20, no. 1, pp. 184-192 . https://doi.org/10.1136/amiajnl-2012-000933
- Accession number :
- edsair.doi.dedup.....46fc1ed00971184501329ba00b6bf845
- Full Text :
- https://doi.org/10.1136/amiajnl-2012-000933⟩