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Ultrafast ligand binding dynamics in the active site of native bacterial nitric oxide reductase
- Source :
- Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1777(7-8):919-924
- Publication Year :
- 2008
- Publisher :
- Elsevier BV, 2008.
-
Abstract
- The active site of nitric oxide reductase from Paracoccus denitrificans contains heme and non-heme iron and is evolutionarily related to heme-copper oxidases. The CO and NO dynamics in the active site were investigated using ultrafast transient absorption spectroscopy. We find that, upon photodissociation from the active site heme, 20% of the CO rebinds in 170 ps, suggesting that not all the CO transiently binds to the non-heme iron. The remaining 80% does not rebind within 4 ns and likely migrates out of the active site without transient binding to the non-heme iron. Rebinding of NO to ferrous heme takes place in approximately 13 ps. Our results reveal that heme-ligand recombination in this enzyme is considerably faster than in heme-copper oxidases and are consistent with a more confined configuration of the active site.
- Subjects :
- Nitric-oxide reductase
Nitric oxide reductase
Biophysics
Heme
Ligands
Nitric Oxide
010402 general chemistry
Photochemistry
01 natural sciences
Biochemistry
Ferrous
03 medical and health sciences
chemistry.chemical_compound
Bacterial Proteins
Ultrafast laser spectroscopy
Paracoccus denitrificans
030304 developmental biology
chemistry.chemical_classification
Carbon Monoxide
0303 health sciences
Ligand dynamics
Binding Sites
biology
Dinuclear center
Photodissociation
Electron Spin Resonance Spectroscopy
Active site
Cell Biology
biology.organism_classification
0104 chemical sciences
Enzyme
chemistry
Spectrophotometry
biology.protein
Oxidoreductases
Oxidation-Reduction
Ultrafast spectroscopy
Protein Binding
Subjects
Details
- ISSN :
- 00052728
- Volume :
- 1777
- Issue :
- 7-8
- Database :
- OpenAIRE
- Journal :
- Biochimica et Biophysica Acta (BBA) - Bioenergetics
- Accession number :
- edsair.doi.dedup.....4865462338437de192b3b1624a6f2cbf
- Full Text :
- https://doi.org/10.1016/j.bbabio.2008.03.012