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Multi-feature data repository development and analytics for image cosegmentation in high-throughput plant phenotyping
- Source :
- PLoS ONE, PLoS ONE, Vol 16, Iss 9, p e0257001 (2021)
- Publication Year :
- 2021
-
Abstract
- Cosegmentation is a newly emerging computer vision technique used to segment an object from the background by processing multiple images at the same time. Traditional plant phenotyping analysis uses thresholding segmentation methods which result in high segmentation accuracy. Although there are proposed machine learning and deep learning algorithms for plant segmentation, predictions rely on the specific features being present in the training set. The need for a multi-featured dataset and analytics for cosegmentation becomes critical to better understand and predict plants’ responses to the environment. High-throughput phenotyping produces an abundance of data that can be leveraged to improve segmentation accuracy and plant phenotyping. This paper introduces four datasets consisting of two plant species, Buckwheat and Sunflower, each split into control and drought conditions. Each dataset has three modalities (Fluorescence, Infrared, and Visible) with 7 to 14 temporal images that are collected in a high-throughput facility at the University of Nebraska-Lincoln. The four datasets (which will be collected under the CosegPP data repository in this paper) are evaluated using three cosegmentation algorithms: Markov random fields-based, Clustering-based, and Deep learning-based cosegmentation, and one commonly used segmentation approach in plant phenotyping. The integration of CosegPP with advanced cosegmentation methods will be the latest benchmark in comparing segmentation accuracy and finding areas of improvement for cosegmentation methodology.
- Subjects :
- Computer science
Information repository
computer.software_genre
Machine Learning
Image Processing, Computer-Assisted
Cluster Analysis
Segmentation
Computer Networks
Throughput (business)
Flowering Plants
Multidisciplinary
Applied Mathematics
Simulation and Modeling
Eukaryota
Plants
Thresholding
Crop Production
Markov Chains
Sunflower
Benchmarking
Phenotype
Physical Sciences
Benchmark (computing)
Medicine
Helianthus
Algorithms
Fagopyrum
Research Article
Crops, Agricultural
Computer and Information Sciences
Imaging Techniques
Science
Machine learning
Research and Analysis Methods
Machine Learning Algorithms
Deep Learning
Artificial Intelligence
Fluorescence Imaging
Humans
Buckwheat
Internet
Markov chain
business.industry
Deep learning
Organisms
Biology and Life Sciences
Analytics
Artificial intelligence
business
computer
Mathematics
Subjects
Details
- ISSN :
- 19326203
- Volume :
- 16
- Issue :
- 9
- Database :
- OpenAIRE
- Journal :
- PloS one
- Accession number :
- edsair.doi.dedup.....4cde09d8e66e199c06c7eb2396070544