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Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries
- Source :
- Frontiers in Cellular and Infection Microbiology, Vol 9 (2019), Frontiers in cellular and infection microbiology, 9. Frontiers Media SA, Frontiers in Cellular and Infection Microbiology, Frontiers in Cellular and Infection Microbiology, 9:21. Frontiers Media S.A.
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Abstract
- Occurrence of non-Candida albicans Candida (NCAC) species that are associated with elevated MIC values and therapeutic failures are increasing. As a result, timely and accurate means of identification to the species level is becoming an essential part of diagnostic practices in clinical settings. In this study, 301 clinically isolated yeast strains recovered from various anatomical sites [Blood (n = 145), other sites (n = 156)] were used to assess the accuracy and practicality of API 20C AUX and 21-plex PCR compared to MALDI-TOF MS and large subunit rDNA (LSU rDNA). MALDI-TOF MS correctly identified 98.33% of yeast isolates, 100% of top five Candida species, 95.7% of rare yeast species, while 1.3% of isolates were misidentified. API 20C AUX correctly identified 83.7% of yeast isolates, 97.2% of top five Candida species, 61.8% of rare yeast species, while 16.2% of yeast isolates were misidentified. The 21-plex PCR, accurately identified 87.3% of yeast isolates, 100% of top five Candida species, 72% of rare yeast species, but it misidentified 1.3% of rare yeast species while 9.9% of whole yeast isolates were not identified. The combination of rapidity of 21-plex PCR and comprehensiveness of API 20C AUX, led to correct identification of 92% of included yeast isolates. Due to expensiveness of MALDI-TOF MS and sequencing, this combination strategy could be the most accurate and inexpensive alternative identification strategy for developing countries. Moreover, by the advent and development of cost-effective, reliable, and rapid PCR machines that cost 130 US dollars, 21-plex could be integrated in routine laboratories of developing and resource-limited countries to specifically identify 95% causative agents of yeast-related infections in human. Databases of MALDI-TOF MS, API 20C AUX, and the number of target species identified by 21-plex require further improvement to keep up with the diverse spectrum of yeast species.
- Subjects :
- 0301 basic medicine
Range (biology)
lcsh:QR1-502
lcsh:Microbiology
law.invention
LSU rDNA sequencing
Cellular and Infection Microbiology
law
Mycological Typing Techniques
Polymerase chain reaction
Candida
Original Research
2. Zero hunger
Candidiasis/diagnosis
Candidiasis
Mycological Typing Techniques/methods
Corpus albicans
DNA/methods
Infectious Diseases
Sequence Analysis, DNA/methods
Molecular Diagnostic Techniques
Identification (biology)
Sequence Analysis
API 20C AUX
Alternative strategy
Candida/chemistry
Microbiology (medical)
Multiplex Polymerase Chain Reaction/methods
030106 microbiology
Immunology
Microbial Sensitivity Tests
Biology
Sensitivity and Specificity
Microbiology
03 medical and health sciences
21-plex PCR
Matrix-Assisted Laser Desorption-Ionization/methods
Humans
MALDI-TOF MS
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods
Ribosomal DNA
Molecular Diagnostic Techniques/methods
Spectrometry
Correction
Sequence Analysis, DNA
developing countries
Mass
Yeast
Matrix-assisted laser desorption/ionization
030104 developmental biology
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Multiplex Polymerase Chain Reaction
Subjects
Details
- Language :
- English
- ISSN :
- 22352988
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Frontiers in Cellular and Infection Microbiology
- Accession number :
- edsair.doi.dedup.....524cd89b0786931d85bc3349aa452801
- Full Text :
- https://doi.org/10.3389/fcimb.2019.00021