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Identification of metabolism-associated pathways and genes involved in male and female liver cancer patients
- Source :
- Journal of Theoretical Biology. 480:218-228
- Publication Year :
- 2019
- Publisher :
- Elsevier BV, 2019.
-
Abstract
- Hepatocellular carcinoma (HCC) is a major type of primary liver cancer. HCC is influenced by sex and multiple metabolic abnormalities. The present study aimed to compare the overall metabolic changes between male and female HCC patients and identify key metabolic genes. Metabolic genes and pathways were identified based on analyses of publicly available data. Differential expression analysis, gene set enrichment analysis, survival analysis and transcriptional regulation analysis were employed to explore sex differences and identify key metabolic genes in HCC. The results suggested that female patients had more severe metabolic gene expression abnormalities and pathway deregulation than male patients. This study identified 9 key metabolic genes, and only upregulated ALDH1A2 independently increased overall survival risk in patients. Bioinformatic analyses suggest that upregulated GATA3 and TAL1 activate ALDH1A2 and then disrupt amino acid and carbohydrate metabolism, which may increase the risk of HCC. This study identified a novel contribution of upregulated ALDH1A2 to HCC. Future studies are needed to elucidate the potential metabolic mechanism of the role of ALDH1A2 in HCC.
- Subjects :
- Male
0301 basic medicine
Statistics and Probability
Transcription, Genetic
Biology
Bioinformatics
General Biochemistry, Genetics and Molecular Biology
ALDH1A2
03 medical and health sciences
0302 clinical medicine
Gene expression
medicine
Transcriptional regulation
Humans
Gene
Survival analysis
General Immunology and Microbiology
Gene Expression Profiling
Applied Mathematics
Liver Neoplasms
GATA3
General Medicine
Prognosis
medicine.disease
Survival Analysis
digestive system diseases
Gene Expression Regulation, Neoplastic
030104 developmental biology
Modeling and Simulation
Hepatocellular carcinoma
Female
General Agricultural and Biological Sciences
Liver cancer
Metabolic Networks and Pathways
030217 neurology & neurosurgery
Transcription Factors
Subjects
Details
- ISSN :
- 00225193
- Volume :
- 480
- Database :
- OpenAIRE
- Journal :
- Journal of Theoretical Biology
- Accession number :
- edsair.doi.dedup.....54e3290403b644a49e98ad41c31c02ed
- Full Text :
- https://doi.org/10.1016/j.jtbi.2019.08.011