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Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes
- Source :
- Environmental Science & Technology. 52:13410-13420
- Publication Year :
- 2018
- Publisher :
- American Chemical Society (ACS), 2018.
-
Abstract
- Quantitative PCR (qPCR) targeting Dehalococcoides mccartyi (Dhc) biomarker genes supports effective management at sites impacted with chlorinated ethenes. To establish correlations between Dhc biomarker gene abundances and ethene formation (i.e., detoxification), 859 groundwater samples representing 62 sites undergoing monitored natural attenuation or enhanced remediation were analyzed. Dhc 16S rRNA genes and the vinyl chloride (VC) reductive dehalogenase genes bvcA and vcrA were detected in 88% and 61% of samples, respectively, from wells with ethene. Dhc 16S rRNA, bvcA, vcrA, and tceA (implicated in cometabolic reductive VC dechlorination) gene abundances all positively correlated with ethene formation. Significantly greater ethene concentrations were observed when Dhc 16S rRNA gene and VC RDase gene abundances exceeded 10(7) and 10(6) copies L(−1), respectively, and when Dhc 16S rRNA- and bvcA + vcrA-to-total bacterial 16S rRNA gene ratios exceeded 0.1%. Dhc 16S rRNA gene-to-vcrA/bvcA ratios near unity also indicated elevated ethene; however, no increased ethene was observed in 19 wells where vcrA and/or bvcA gene copy numbers exceeded Dhc cell numbers 10- to 10 000-fold. Approximately one-third of samples with detectable ethene lacked bvcA, vcrA, and tceA, suggesting that comprehensive understanding of VC detoxification biomarkers has not been achieved. Although the current biomarker suite is incomplete, the data analysis corroborates the value of the available Dhc DNA biomarkers for prognostic and diagnostic groundwater monitoring at sites impacted with chlorinated ethenes.
- Subjects :
- DNA, Bacterial
0301 basic medicine
endocrine system
030106 microbiology
Vinyl Chloride
010501 environmental sciences
01 natural sciences
Article
Vinyl chloride
03 medical and health sciences
chemistry.chemical_compound
RNA, Ribosomal, 16S
Environmental Chemistry
Gene
0105 earth and related environmental sciences
Dehalogenase
Chemistry
Dehalococcoides mccartyi
Chloroflexi
General Chemistry
Ethylenes
Ribosomal RNA
16S ribosomal RNA
Molecular biology
Biodegradation, Environmental
Real-time polymerase chain reaction
Bacterial 16S rRNA
Subjects
Details
- ISSN :
- 15205851 and 0013936X
- Volume :
- 52
- Database :
- OpenAIRE
- Journal :
- Environmental Science & Technology
- Accession number :
- edsair.doi.dedup.....556350882c5a4891fd900876f97dba03
- Full Text :
- https://doi.org/10.1021/acs.est.8b04373