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Gateways to the FANTOM5 promoter level mammalian expression atlas

Authors :: Masayoshi Itoh
Jayson Harshbarger
Fumi Hori
Toshiaki Katayama
Sachi Ishikawa-Kato
Derek W. Wright
Erik Arner
Yoshihide Hayashizaki
Hisashi Shimoji
Shiro Fukuda
Hiromasa Ono
Terrence F. Meehan
Rajaram Kaliyaperumal
Jessica Severin
Michael Rehli
Takeya Kasukawa
J Kenneth Baillie
Albin Sandelin
Carsten O. Daub
Alistair R. R. Forrest
Timo Lassmann
Hideya Kawaji
Tetsuro Toyoda
Tom C. Freeman
Alexander D. Diehl
Serkan Sahin
Erik Anthony Schultes
Piero Carninci
Hidemasa Bono
Emmanuel Dimont
Nicolas Bertin
Winston Hide
Kaori Fujieda
Koro Nishikata
Imad Abugessaisa
Christopher J. Mungall
Mark Thompson
Peter A C 't Hoen
Marina Lizio
Michiel J. L. de Hoon
Zuotian Tatum
Source :: Genome Biology, Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A G, Schultes, E A, 't Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y, Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology (Online Edition), vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6, Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A, Schultes, E A, Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y & Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology, vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6, Genome Biology, 16
Publication Year :: 2015
Abstract: The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas. Electronic supplementary material The online version of this article (doi:10.1186/s13059-014-0560-6) contains supplementary material, which is available to authorized users.

Details

Language :: English
ISSN :: 14656906 and 1474760X
Database :: OpenAIRE
Journal :: Genome Biology, Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A G, Schultes, E A, 't Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y, Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology (Online Edition), vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6, Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A, Schultes, E A, Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y & Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology, vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6, Genome Biology, 16
Accession number :: edsair.doi.dedup.....58fe50e750efbb2fc09a7a6fdd3154aa
Full Text :: https://doi.org/10.1186/s13059-014-0560-6