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Large-scale association analyses identify host factors influencing human gut microbiome composition

Authors :
Jordana T. Bell
Sara Vieira-Silva
Torben Hansen
Andrew D. Paterson
Nicholas J. Timpson
Robert C. Kaplan
Vincent W. V. Jaddoe
Fabian Frost
Gwen Falony
Zachary D. Wallen
Mauro D'Amato
David A. Hughes
Jakob Stokholm
Lude Franke
Matthew A. Jackson
Marc Jan Bonder
Gonneke Willemsen
Dmitrii Borisevich
Hocheol Shin
Kyoko Watanabe
Annique Claringbould
Joanna Szopinska-Tokov
Markus M. Lerch
Caroline I. Le Roy
Markku Laakso
Eran Segal
Daisy Jonkers
Jee-Young Moon
Williams Turpin
Susanna Walter
Xingrong Liu
Lars Agréus
Tim D. Spector
Malte C. Rühlemann
Raul Y. Tito
Daniel Keszthelyi
Gareth E. Davies
Shiraz A. Shah
Ad A.M. Masclee
Carolina Medina-Gomez
Kreete Lüll
Robert D. Burk
Elin Org
Matthias Laudes
Cornelia M. van Duijn
Myriam Fornage
Urmo Võsa
Oluf Pedersen
Lenore J. Launer
Kaitlin H Wade
Juan Antonio Raygoza Garay
Rob Knight
Elad Barkan
Daria V. Zhernakova
Michael Boehnke
Frank Ulrich Weiss
Andre Franke
Jonathan Thorsen
Henry Völzke
Jingyuan Fu
Fernando Rivadeneira
Daphna Rothschild
Robert Kraaij
Katie A. Meyer
Ayse Demirkan
Claire J. Steves
Stefan Weiss
Cisca Wijmenga
Hans Bisgaard
Qi Qibin
Corinna Bang
Rodrigo Bacigalupe
Haydeh Payami
Han-Na Kim
Liesbeth Duijts
Alexander Kurilshikov
Serena Sanna
Kenneth Croitoru
Jeroen Raes
Djawad Radjabzadeh
Eco J. C. de Geus
Jun Wang
Richard G. IJzerman
Harm-Jan Westra
Uwe Völker
Torben Jørgensen
Dorret I. Boomsma
Omer Weissbrod
Alexandra Zhernakova
Alejandro Arias Vasquez
Casey T. Finnicum
Hyung Lae Kim
Marie Joossens
Tue H. Hansen
Henriette A. Moll
Anna Andreasson
Larbi Bedrani
Zlatan Mujagic
Adriaan van der Graaf
Søren J. Sørensen
Aldons J. Lusis
Wolfgang Lieb
Georg Homuth
André G. Uitterlinden
Biological Psychology
APH - Mental Health
APH - Methodology
Complex Trait Genetics
Amsterdam Neuroscience - Complex Trait Genetics
APH - Health Behaviors & Chronic Diseases
Interne Geneeskunde
RS: NUTRIM - R2 - Liver and digestive health
MUMC+: MA Maag Darm Lever (9)
RS: GROW - R3 - Innovative Cancer Diagnostics & Therapy
Internal Medicine
Epidemiology
Pediatrics
Erasmus MC other
Center for Liver, Digestive and Metabolic Diseases (CLDM)
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
Stem Cell Aging Leukemia and Lymphoma (SALL)
Translational Immunology Groningen (TRIGR)
Internal medicine
ACS - Diabetes & metabolism
Amsterdam Gastroenterology Endocrinology Metabolism
Source :
Nature Genetics, 53, 2, pp. 156-165, Kurilshikov, A, Medina-Gomez, C, Bacigalupe, R, Radjabzadeh, D, Wang, J, Demirkan, A, le Roy, C I, Raygoza Garay, J A, Finnicum, C T, Liu, X, Zhernakova, D V, Bonder, M J, Hansen, T H, Frost, F, Rühlemann, M C, Turpin, W, Moon, J-Y, Kim, H-N, Lüll, K, Barkan, E, Shah, S A, Fornage, M, Szopinska-Tokov, J, Wallen, Z D, Borisevich, D, Agreus, L, Andreasson, A, Bang, C, Bedrani, L, Bell, J T, Bisgaard, H, Boehnke, M, Boomsma, D I, Burk, R D, Claringbould, A, Croitoru, K, Davies, G E, van Duijn, C M, Duijts, L, Falony, G, Fu, J, van der Graaf, A, Hansen, T, Homuth, G, Hughes, D A, Ijzerman, R G, Jackson, M A, Jaddoe, V W V, Joossens, M, Jørgensen, T, Keszthelyi, D, Knight, R, Laakso, M, Laudes, M, Launer, L J, Lieb, W, Lusis, A J, Masclee, A A M, Moll, H A, Mujagic, Z, Qibin, Q, Rothschild, D, Shin, H, Sørensen, S R J, Steves, C J, Thorsen, J, Timpson, N J, Tito, R Y, Vieira-Silva, S, Völker, U, Völzke, H, Võsa, U, Wade, K H, Walter, S, Watanabe, K, Weiss, S, Weiss, F U, Weissbrod, O, Westra, H-J, Willemsen, G, Payami, H, Jonkers, D M A E, Arias Vasquez, A, de Geus, E J C, Meyer, K A, Stokholm, J, Segal, E, Org, E, Wijmenga, C, Kim, H-L, Kaplan, R C, Spector, T D, Uitterlinden, A G, Rivadeneira, F, Franke, A, Lerch, M M, Franke, L, Sanna, S, D’Amato, M, Pedersen, O, Paterson, A D, Kraaij, R, Raes, J & Zhernakova, A 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, no. 2, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1, Nature Genetics, 53(2), 156-165. Nature Publishing Group, Nat Genet, Kurilshikov, A, Medina-Gomez, C, Bacigalupe, R, Radjabzadeh, D, Wang, J, Demirkan, A, Le Roy, C I, Raygoza Garay, J A, Finnicum, C T, Liu, X, Zhernakova, D V, Bonder, M J, Hansen, T H, Frost, F, Rühlemann, M C, Turpin, W, Moon, J Y, Kim, H N, Lüll, K, Barkan, E, Shah, S A, Fornage, M, Szopinska-Tokov, J, Wallen, Z D, Borisevich, D, Agreus, L, Andreasson, A, Bang, C, Bedrani, L, Bell, J T, Bisgaard, H, Boehnke, M, Boomsma, D I, Burk, R D, Claringbould, A, Croitoru, K, Davies, G E, van Duijn, C M, Duijts, L, Falony, G, Fu, J, van der Graaf, A, Hansen, T, Homuth, G, Hughes, D A, Ijzerman, R G, Jackson, M A, Jaddoe, V W V, Joossens, M, Jørgensen, T, Keszthelyi, D, Knight, R, Laakso, M, Laudes, M, Launer, L J, Lieb, W, Lusis, A J, Masclee, A A M, Moll, H A, Mujagic, Z, Qibin, Q, Rothschild, D, Shin, H, Sørensen, S J, Steves, C J, Thorsen, J, Timpson, N J, Tito, R Y, Vieira-Silva, S, Völker, U, Völzke, H, Võsa, U, Wade, K H, Walter, S, Watanabe, K, Weiss, S, Weiss, F U, Weissbrod, O, Westra, H J, Willemsen, G, Payami, H, Jonkers, D M A E, Arias Vasquez, A, de Geus, E J C, Meyer, K A, Stokholm, J, Segal, E, Org, E, Wijmenga, C, Kim, H L, Kaplan, R C, Spector, T D, Uitterlinden, A G, Rivadeneira, F, Franke, A, Lerch, M M, Franke, L, Sanna, S, D’Amato, M, Pedersen, O, Paterson, A D, Kraaij, R, Raes, J, Zhernakova, A & MiBioGen Consortium Initiative 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, no. 2, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1, Nature Genetics, Nature Genetics, 53, 156-165, Kurilshikov, A, Medina-Gomez, C, Bacigalupe, R, Radjabzadeh, D, Wang, J, Demirkan, A, Le Roy, C I, Raygoza Garay, J A, Finnicum, C T, Liu, X, Zhernakova, D V, Bonder, M J, Hansen, T H, Frost, F, Rühlemann, M C, Turpin, W, Moon, J Y, Kim, H N, Lüll, K, Barkan, E, Shah, S A, Fornage, M, Szopinska-Tokov, J, Wallen, Z D, Borisevich, D, Agreus, L, Andreasson, A, Bang, C, Bedrani, L, Bell, J T, Bisgaard, H, Boehnke, M, Boomsma, D I, Burk, R D, Claringbould, A, Croitoru, K, Davies, G E, van Duijn, C M, Duijts, L, Falony, G, Fu, J, van der Graaf, A, Hansen, T, Homuth, G, Hughes, D A, Ijzerman, R G, Jackson, M A, Jaddoe, V W V, Joossens, M, Jørgensen, T, Keszthelyi, D, Knight, R, Laakso, M, Laudes, M, Launer, L J, Lieb, W, Lusis, A J, Masclee, A A M, Moll, H A, Mujagic, Z, Qibin, Q, Rothschild, D, Shin, H, Sørensen, S J, Steves, C J, Thorsen, J, Timpson, N J, Tito, R Y, Vieira-Silva, S, Völker, U, Völzke, H, Võsa, U, Wade, K H, Walter, S, Watanabe, K, Weiss, S, Weiss, F U, Weissbrod, O, Westra, H J, Willemsen, G, Payami, H, Jonkers, D M A E, Arias Vasquez, A, de Geus, E J C, Meyer, K A, Stokholm, J, Segal, E, Org, E, Wijmenga, C, Kim, H L, Kaplan, R C, Spector, T D, Uitterlinden, A G, Rivadeneira, F, Franke, A, Lerch, M M, Franke, L, Sanna, S, D’Amato, M, Pedersen, O, Paterson, A D, Kraaij, R, Raes, J & Zhernakova, A 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1, Nature genetics, vol 53, iss 2, Nature Genetics, 53, 156-165. Nature Publishing Group, Kurilshikov, A, Hughes, D A, Timpson, N J, Wade, K H, Zhernakova, A & et al. 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, no. 2, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1
Publication Year :
2021

Abstract

Contains fulltext : 231681.pdf (Publisher’s version ) (Closed access) To study the effect of host genetics on gut microbiome composition, the MiBioGen consortium curated and analyzed genome-wide genotypes and 16S fecal microbiome data from 18,340 individuals (24 cohorts). Microbial composition showed high variability across cohorts: only 9 of 410 genera were detected in more than 95% of samples. A genome-wide association study of host genetic variation regarding microbial taxa identified 31 loci affecting the microbiome at a genome-wide significant (P

Details

ISSN :
10614036
Database :
OpenAIRE
Journal :
Nature Genetics, 53, 2, pp. 156-165, Kurilshikov, A, Medina-Gomez, C, Bacigalupe, R, Radjabzadeh, D, Wang, J, Demirkan, A, le Roy, C I, Raygoza Garay, J A, Finnicum, C T, Liu, X, Zhernakova, D V, Bonder, M J, Hansen, T H, Frost, F, Rühlemann, M C, Turpin, W, Moon, J-Y, Kim, H-N, Lüll, K, Barkan, E, Shah, S A, Fornage, M, Szopinska-Tokov, J, Wallen, Z D, Borisevich, D, Agreus, L, Andreasson, A, Bang, C, Bedrani, L, Bell, J T, Bisgaard, H, Boehnke, M, Boomsma, D I, Burk, R D, Claringbould, A, Croitoru, K, Davies, G E, van Duijn, C M, Duijts, L, Falony, G, Fu, J, van der Graaf, A, Hansen, T, Homuth, G, Hughes, D A, Ijzerman, R G, Jackson, M A, Jaddoe, V W V, Joossens, M, Jørgensen, T, Keszthelyi, D, Knight, R, Laakso, M, Laudes, M, Launer, L J, Lieb, W, Lusis, A J, Masclee, A A M, Moll, H A, Mujagic, Z, Qibin, Q, Rothschild, D, Shin, H, Sørensen, S R J, Steves, C J, Thorsen, J, Timpson, N J, Tito, R Y, Vieira-Silva, S, Völker, U, Völzke, H, Võsa, U, Wade, K H, Walter, S, Watanabe, K, Weiss, S, Weiss, F U, Weissbrod, O, Westra, H-J, Willemsen, G, Payami, H, Jonkers, D M A E, Arias Vasquez, A, de Geus, E J C, Meyer, K A, Stokholm, J, Segal, E, Org, E, Wijmenga, C, Kim, H-L, Kaplan, R C, Spector, T D, Uitterlinden, A G, Rivadeneira, F, Franke, A, Lerch, M M, Franke, L, Sanna, S, D’Amato, M, Pedersen, O, Paterson, A D, Kraaij, R, Raes, J & Zhernakova, A 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, no. 2, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1, Nature Genetics, 53(2), 156-165. Nature Publishing Group, Nat Genet, Kurilshikov, A, Medina-Gomez, C, Bacigalupe, R, Radjabzadeh, D, Wang, J, Demirkan, A, Le Roy, C I, Raygoza Garay, J A, Finnicum, C T, Liu, X, Zhernakova, D V, Bonder, M J, Hansen, T H, Frost, F, Rühlemann, M C, Turpin, W, Moon, J Y, Kim, H N, Lüll, K, Barkan, E, Shah, S A, Fornage, M, Szopinska-Tokov, J, Wallen, Z D, Borisevich, D, Agreus, L, Andreasson, A, Bang, C, Bedrani, L, Bell, J T, Bisgaard, H, Boehnke, M, Boomsma, D I, Burk, R D, Claringbould, A, Croitoru, K, Davies, G E, van Duijn, C M, Duijts, L, Falony, G, Fu, J, van der Graaf, A, Hansen, T, Homuth, G, Hughes, D A, Ijzerman, R G, Jackson, M A, Jaddoe, V W V, Joossens, M, Jørgensen, T, Keszthelyi, D, Knight, R, Laakso, M, Laudes, M, Launer, L J, Lieb, W, Lusis, A J, Masclee, A A M, Moll, H A, Mujagic, Z, Qibin, Q, Rothschild, D, Shin, H, Sørensen, S J, Steves, C J, Thorsen, J, Timpson, N J, Tito, R Y, Vieira-Silva, S, Völker, U, Völzke, H, Võsa, U, Wade, K H, Walter, S, Watanabe, K, Weiss, S, Weiss, F U, Weissbrod, O, Westra, H J, Willemsen, G, Payami, H, Jonkers, D M A E, Arias Vasquez, A, de Geus, E J C, Meyer, K A, Stokholm, J, Segal, E, Org, E, Wijmenga, C, Kim, H L, Kaplan, R C, Spector, T D, Uitterlinden, A G, Rivadeneira, F, Franke, A, Lerch, M M, Franke, L, Sanna, S, D’Amato, M, Pedersen, O, Paterson, A D, Kraaij, R, Raes, J, Zhernakova, A & MiBioGen Consortium Initiative 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, no. 2, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1, Nature Genetics, Nature Genetics, 53, 156-165, Kurilshikov, A, Medina-Gomez, C, Bacigalupe, R, Radjabzadeh, D, Wang, J, Demirkan, A, Le Roy, C I, Raygoza Garay, J A, Finnicum, C T, Liu, X, Zhernakova, D V, Bonder, M J, Hansen, T H, Frost, F, Rühlemann, M C, Turpin, W, Moon, J Y, Kim, H N, Lüll, K, Barkan, E, Shah, S A, Fornage, M, Szopinska-Tokov, J, Wallen, Z D, Borisevich, D, Agreus, L, Andreasson, A, Bang, C, Bedrani, L, Bell, J T, Bisgaard, H, Boehnke, M, Boomsma, D I, Burk, R D, Claringbould, A, Croitoru, K, Davies, G E, van Duijn, C M, Duijts, L, Falony, G, Fu, J, van der Graaf, A, Hansen, T, Homuth, G, Hughes, D A, Ijzerman, R G, Jackson, M A, Jaddoe, V W V, Joossens, M, Jørgensen, T, Keszthelyi, D, Knight, R, Laakso, M, Laudes, M, Launer, L J, Lieb, W, Lusis, A J, Masclee, A A M, Moll, H A, Mujagic, Z, Qibin, Q, Rothschild, D, Shin, H, Sørensen, S J, Steves, C J, Thorsen, J, Timpson, N J, Tito, R Y, Vieira-Silva, S, Völker, U, Völzke, H, Võsa, U, Wade, K H, Walter, S, Watanabe, K, Weiss, S, Weiss, F U, Weissbrod, O, Westra, H J, Willemsen, G, Payami, H, Jonkers, D M A E, Arias Vasquez, A, de Geus, E J C, Meyer, K A, Stokholm, J, Segal, E, Org, E, Wijmenga, C, Kim, H L, Kaplan, R C, Spector, T D, Uitterlinden, A G, Rivadeneira, F, Franke, A, Lerch, M M, Franke, L, Sanna, S, D’Amato, M, Pedersen, O, Paterson, A D, Kraaij, R, Raes, J & Zhernakova, A 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1, Nature genetics, vol 53, iss 2, Nature Genetics, 53, 156-165. Nature Publishing Group, Kurilshikov, A, Hughes, D A, Timpson, N J, Wade, K H, Zhernakova, A & et al. 2021, ' Large-scale association analyses identify host factors influencing human gut microbiome composition ', Nature Genetics, vol. 53, no. 2, pp. 156-165 . https://doi.org/10.1038/s41588-020-00763-1
Accession number :
edsair.doi.dedup.....5b2e8f48d9f4a1a7f6864962650bb03d