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Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)

Authors :
Hans-Peter Klenk
Stefan Spring
Alfons J. M. Stams
Michael Visser
Alla Lapidus
Lynne Goodwin
Natalia Ivanova
Jan Kuever
Sofiya N. Parshina
Tanja Woyke
Jan Fang Cheng
Roxanne Tapia
Peter J. Schaap
Manfred Rohde
Susan Lucas
Sam Pitluck
Markus Göker
Gerard Muyzer
Miriam Land
Nikos C. Kyrpides
Frank W. Larimer
John C. Detter
Rizlan Bernier-Latmani
Alex Copeland
Inês A. C. Pereira
Cliff Han
Loren Hauser
Caroline M. Plugge
Megan Lu
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Source :
Standards in Genomic Sciences 7 (2012), Standards in Genomic Sciences, 7, 304-319, Standards in Genomic Sciences
Publication Year :
2012

Abstract

Strain DLT (= DSM 2154 = ATCC 23193 = NCIMB 8452) is the type strain of the species Desulfotomaculum ruminis [1], one out of current-ly 30 species with validly published names in the paraphyletic genus Desulfotomaculum [2,3]. Strain DLT was initially isolated by G. S. Coleman in the 1950s from the rumen of hay-fed sheep [4]. Dissimilatory reduction of sulfate to sulfide in the rumen was first demonstrated by Lewis [5], who dosed fistulated sheep with sulfate and deter-mined the amount of sulfide produced. As high amounts of sulfide may be toxic to animals, bacte-rial sulfate-reduction in ruminants was a concern due to the presence of sulfate in grass and hay. D. ruminis represented the first pure culture of a sul-fate-reducing bacterium isolated from the rumen. The genus name was derived from the Latin words 'de', from, ‘sulfur’, sulfur, and 'tomaculum', a kind of sausage, meaning 'a sausage-shaped sul-fate reducer' [2,6]. The species epithet is derived from the Latin word 'rumen', throat, first stomach (rumen) of a ruminant, meaning of a rumen [1,2]. Here, we present a summary classification and a set of features for D. ruminis strain DLT, together with the description of the complete genomic se-quencing and annotation. The complete genome sequence of strain DLT will provide valuable in-formation for defining a more adequate descrip-tion of the currently paraphyletic genus Desulfotomaculum

Details

Language :
English
ISSN :
19443277
Database :
OpenAIRE
Journal :
Standards in Genomic Sciences 7 (2012), Standards in Genomic Sciences, 7, 304-319, Standards in Genomic Sciences
Accession number :
edsair.doi.dedup.....5e84dea648dd89e4a60eb8dff7cfb74b