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Dynamics of Completely Unfolded and Native Proteins through Solid-State Nanopores as a Function of Electric Driving Force

Authors :
E. Bourhis
Laurent Bacri
Jacques Gierak
Benjamin Cressiot
Juan Pelta
Ralf Jede
Loïc Auvray
Jean-Michel Betton
Abdelghani Oukhaled
Manuela Pastoriza-Gallego
Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement (LAMBE)
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Cergy Pontoise (UCP)
Université Paris-Seine-Université Paris-Seine-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
Laboratoire de photonique et de nanostructures (LPN)
Centre National de la Recherche Scientifique (CNRS)
Biochimie Structurale
Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]
RAITH GmbH
Matière et Systèmes Complexes (MSC (UMR_7057))
Centre National de la Recherche Scientifique (CNRS)-Université Paris Diderot - Paris 7 (UPD7)
ANR-08-BLAN-0094,TRANSFOLDPROT,Dynamics and mechanics of protein transport, interaction and folding through different protein channels at the single molecule level(2008)
ANR-06-NANO-0028,ACTIVE NANOPORES,Fluorescently or chemically active solid state nanopores made by focused ions beam for the detection or synthesis of passing macromolecules(2006)
ANR-08-NSCI-0006,Nanopore(2008)
Université Paris-Seine-Université Paris-Seine-Université d'Évry-Val-d'Essonne (UEVE)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
Matière et Systèmes Complexes (MSC)
Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS)
Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement (LAMBE - UMR 8587)
Université Paris-Seine-Université Paris-Seine-Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
ANR-08-NSCI-0006,Nanopore,Novel force spectroscopy with nanopores(2008)
Source :
ACS Nano, ACS Nano, American Chemical Society, 2011, 5 (5), pp.3628-3638. ⟨10.1021/nn1034795⟩, ACS Nano, 2011, 5 (5), pp.3628-3638. ⟨10.1021/nn1034795⟩
Publication Year :
2011
Publisher :
HAL CCSD, 2011.

Abstract

International audience; We report experimentally the dynamic properties of the entry and transport of unfolded and native proteins through a solid-state nanopore as a function of applied voltage, and we discuss the experimental data obtained as compared to theory. We show an exponential increase in the event frequency of current blockades and an exponential decrease in transport times as a function of the electric driving force. The normalized current blockage ratio remains constant or decreases for folded or unfolded proteins, respectively, as a function of the transmembrane potential. The unfolded protein is stretched under the electric driving force. The dwell time of native compact proteins in the pore is almost 1 order of magnitude longer than that of unfolded proteins, and the event frequency for both protein conformations is low. We discuss the possible phenomena hindering the transport of proteins through the pores, which could explain these anomalous dynamics, in particular, electro-osmotic counterflow and protein adsorption on the nanopore wall.

Details

Language :
English
ISSN :
19360851
Database :
OpenAIRE
Journal :
ACS Nano, ACS Nano, American Chemical Society, 2011, 5 (5), pp.3628-3638. ⟨10.1021/nn1034795⟩, ACS Nano, 2011, 5 (5), pp.3628-3638. ⟨10.1021/nn1034795⟩
Accession number :
edsair.doi.dedup.....60bbc71c08293fdf2ff2b9e538ca8c33
Full Text :
https://doi.org/10.1021/nn1034795⟩