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Common pitfalls and recommendations for using machine learning to detect and prognosticate for COVID-19 using chest radiographs and CT scans

Authors :
Roberts, Michael
Driggs, Derek
Thorpe, Matthew
Gilbey, Julian
Yeung, Michael
Ursprung, Stephan
Aviles-Rivero, Angelica I.
Etmann, Christian
McCague, Cathal
Beer, Lucian
Weir-McCall, Jonathan R.
Teng, Zhongzhao
Gkrania-Klotsas, Effrossyni
Ruggiero, Alessandro
Korhonen, Anna
Jefferson, Emily
Ako, Emmanuel
Langs, Georg
Gozaliasl, Ghassem
Yang, Guang
Prosch, Helmut
Preller, Jacobus
Stanczuk, Jan
Tang, Jing
Hofmanninger, Johannes
Babar, Judith
Sánchez, Lorena Escudero
Thillai, Muhunthan
Gonzalez, Paula Martin
Teare, Philip
Zhu, Xiao Xiang
Patel, Mishal
Cafolla, Conor
Azadbakht, Hojjat
Jacob, Joseph
Lowe, Josh
Zhang, Kang
Bradley, Kyle
Wassin, Marcel
Holzer, Markus
Ji, Kangyu
Ortet, Maria Delgado
Ai, Tao
Walton, Nicholas
Lio, Pietro
Stranks, Samuel
Shadbahr, Tolou
Lin, Weizhe
Zha, Yunfei
Niu, Zhangming
Rudd, James H. F.
Sala, Evis
Schönlieb, Carola-Bibiane
Department of Physics
Research Program in Systems Oncology
Faculty of Medicine
Roberts, Michael [0000-0002-3484-5031]
Gilbey, Julian [0000-0002-5987-5261]
Yeung, Michael [0000-0001-8700-9144]
Ursprung, Stephan [0000-0003-2476-178X]
Weir-McCall, Jonathan R. [0000-0001-5842-842X]
Gkrania-Klotsas, Effrossyni [0000-0002-0930-8330]
Rudd, James H. F. [0000-0003-2243-3117]
Sala, Evis [0000-0002-5518-9360]
Apollo - University of Cambridge Repository
Roberts, M [0000-0002-3484-5031]
Gilbey, J [0000-0002-5987-5261]
Yeung, M [0000-0001-8700-9144]
Ursprung, S [0000-0003-2476-178X]
Weir-McCall, JR [0000-0001-5842-842X]
Gkrania-Klotsas, E [0000-0002-0930-8330]
Rudd, JHF [0000-0003-2243-3117]
Sala, E [0000-0002-5518-9360]
Source :
Roberts, M, Driggs, D, Thorpe, M, Gilbey, J, Yeung, M, Ursprung, S, Aviles-Rivero, A, Etmann, C, McCague, C, Beer, L, Weir-McCall, J, Teng, Z, Gkrania-Klotsas, E, AIX-COVNET, Rudd, J, Sala, E & Schoenlieb, C-B 2021, ' Common pitfalls and recommendations for using machine learning to detect and prognosticate for COVID-19 using chest radiographs and CT scans ', Nature Machine Intelligence, vol. 3, pp. 199-217 . https://doi.org/10.1038/s42256-021-00307-0
Publication Year :
2021

Abstract

Machine learning methods offer great promise for fast and accurate detection and prognostication of COVID-19 from standard-of-care chest radiographs (CXR) and computed tomography (CT) images. Many articles have been published in 2020 describing new machine learning-based models for both of these tasks, but it is unclear which are of potential clinical utility. In this systematic review, we search EMBASE via OVID, MEDLINE via PubMed, bioRxiv, medRxiv and arXiv for published papers and preprints uploaded from January 1, 2020 to October 3, 2020 which describe new machine learning models for the diagnosis or prognosis of COVID-19 from CXR or CT images. Our search identified 2,212 studies, of which 415 were included after initial screening and, after quality screening, 61 studies were included in this systematic review. Our review finds that none of the models identified are of potential clinical use due to methodological flaws and/or underlying biases. This is a major weakness, given the urgency with which validated COVID-19 models are needed. To address this, we give many recommendations which, if followed, will solve these issues and lead to higher quality model development and well documented manuscripts.<br />35 pages, 3 figures, 2 tables, updated to the period 1 January 2020 - 3 October 2020

Details

Language :
English
Database :
OpenAIRE
Journal :
Roberts, M, Driggs, D, Thorpe, M, Gilbey, J, Yeung, M, Ursprung, S, Aviles-Rivero, A, Etmann, C, McCague, C, Beer, L, Weir-McCall, J, Teng, Z, Gkrania-Klotsas, E, AIX-COVNET, Rudd, J, Sala, E & Schoenlieb, C-B 2021, ' Common pitfalls and recommendations for using machine learning to detect and prognosticate for COVID-19 using chest radiographs and CT scans ', Nature Machine Intelligence, vol. 3, pp. 199-217 . https://doi.org/10.1038/s42256-021-00307-0
Accession number :
edsair.doi.dedup.....6203f7e866d10f75cc7e536c8041e1e0