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Mitochondrial iron transporter (MIT) gene in potato (Solanum tuberosum): comparative bioinformatics, physiological and expression analyses in response to drought and salinity
- Source :
- BioMetals. 35:875-887
- Publication Year :
- 2022
- Publisher :
- Springer Science and Business Media LLC, 2022.
-
Abstract
- Mitochondrial iron transporter (MIT) genes are essential for mitochondrial acquisition/import of iron and vital to proper functioning of mitochondria. Unlike other organisms, research on the MITs in plants is limited. The present study provides comparative bioinformatics assays for the potato MIT gene (StMIT) as well as gene expression analyses. The phylogenetic analyses revealed monocots-dicot divergence in MIT proteins and it was also found clade specific motif diversity. In addition, docking analyses indicated that Asp172 and Gly100 residues to be identified as the closest residues binding to ferrous iron. The percentage of structure overlap of the StMIT 3D protein model with Arabidopsis, maize and rice MIT proteins was found between 80.18% and 85.71%. The transcript analyses exhibited that the expression of StMIT was triggered under drought and salinity stresses. The findings of the present study would provide valuable leads for further studies targeting specifically the MIT gene and generally the plant iron metabolism.
- Subjects :
- Salinity
Iron
Arabidopsis
Metals and Alloys
Computational Biology
Membrane Transport Proteins
Plants
General Biochemistry, Genetics and Molecular Biology
Droughts
Prediction
Acid
Mechanisms
Tolerance
Genotypes
Enzymes
Leaves
Sites
Sumo
Mitoferrin
Mitochondrial carrier family
Iron homeostasis
In silico analyses
Biomaterials
Gene Expression Regulation, Plant
Stress, Physiological
General Agricultural and Biological Sciences
Phylogeny
Plant Proteins
Solanum tuberosum
Subjects
Details
- ISSN :
- 15728773 and 09660844
- Volume :
- 35
- Database :
- OpenAIRE
- Journal :
- BioMetals
- Accession number :
- edsair.doi.dedup.....645208a64a984a51468f7f0491e3eb41