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Analysis of immune-related key genes in Alzheimer’s disease
- Source :
- Bioengineered, article-version (VoR) Version of Record, Bioengineered, Vol 12, Iss 2, Pp 9610-9624 (2021)
- Publication Year :
- 2021
- Publisher :
- Informa UK Limited, 2021.
-
Abstract
- This research revealed that 15 modules were obtained through weighted gene co-expression network analysis (WGCNA), among which the magenta and blue modules were significantly associated with Alzheimer's Disease (AD). There were 121 genes in the magenta module, and 1022 genes in the blue module. Through the differently expressed genes (DEGs) analysis, significant differences were shown in 134 genes (88 were up-regulated and 46 were down-regulated). 34 immune-key genes were obtained after 3 types of genes were crossed. Functional enrichment analysis showed that these genes were mainly enriched in cytokine receptor activity, immune receptor activity, and integrin family cell surface interactions. Through protein-protein interaction (PPI) network analysis, 10 hub genes were obtained: SERPINE1, ZBTB16, CD44, BCL6, HMOX1, SLC11A1, CEACAM8, ITGA5, SOCS3, and IL4R. Through immune-infiltration analysis, significant differences were demonstrated in 4 immune cells: CD8+ T cells, resting NK cells, M2 macrophages and activated dendritic cells, and a significant positive correlation was shown between CD8+ T cells and macrophages M2, or between resting NK cells and activated dendritic cells. CEACAM8 was positively correlated with CD8+ T cells and macrophages M2, and negatively correlated with activated dendritic cells and resting NK cells while the other 9 genes showed the opposite. Receiver operating characteristic (ROC) curve analysis demonstrated that both the differential immune cells and 10 hub genes had good diagnostic values. In GSE122063, the hub genes were verified and BCL6, CD44, HMOX1, IL4R, ITGA5 and SOCS3 were up-regulated. Meanwhile, the expression of hub genes was up-regulated in the brain tissues of AD rats. This study is of great significance for the diagnosis and therapy of AD.
- Subjects :
- Male
Cell
Alzheimer’s disease (AD)
Down-Regulation
Bioengineering
Immune receptor
Biology
Applied Microbiology and Biotechnology
Immune system
immune-infiltration analysis
Alzheimer Disease
medicine
Animals
Gene Regulatory Networks
Protein Interaction Maps
Cytokine receptor activity
Gene
Gene Expression Profiling
CD44
weighted gene co-expression network analysis (WGCNA)
General Medicine
BCL6
ROC curve analysis
Rats
Up-Regulation
Cell biology
medicine.anatomical_structure
immune-related genes
biology.protein
TP248.13-248.65
CD8
Research Article
Research Paper
Biotechnology
Subjects
Details
- ISSN :
- 21655987 and 21655979
- Volume :
- 12
- Database :
- OpenAIRE
- Journal :
- Bioengineered
- Accession number :
- edsair.doi.dedup.....65dfab4950265da5d957898e5d0c4761