Supplemental tables and figures from NetH2pan: A Computational Tool to Guide MHC Peptide Prediction on Murine Tumors

Supplemental Table S1: AUC and PPV for NetH2pan network ensemble Supplemental Table S2: AUC and PPV for prediction of ligands by NetH2pan, trained with or without sequence context of five residues flanking the peptide. Supplemental Table S3. Yield (# of peptides) from soluble MHC transfectants and MMTV-PyMT tumors. Supplemental Table S4. Cancer-associated peptides eluted from MMTV-PyMT tumors. Supplemental Figure S1. MHC Class I peptide tissue extraction approach. Supplemental Figure S2. Peptide overlap with soluble MHC peptide elution and primary tumor cell elution. Supplemental Figure S3. MMTV-PyMT tumors express Class I MHC.