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Identification of potential biomarkers and survival analysis for oral squamous cell carcinoma: A transcriptomic study

Authors :
Daniela Paola Santos de Paula Souza
Lorena dos Reis Pereira Queiroz
Marcela Gonçalves de Souza
Sabrina Ferreira de Jesus
Emisael Stênio Batista Gomes
Rogério Trancoso Vitorino
Sérgio Henrique Sousa Santos
Lucyana Conceição Farias
Alfredo Maurício Batista de Paula
Marcos Flávio Silveira Vasconcelos D'Angelo
Carlos Alberto de Carvalho Fraga
André Luiz Sena Guimarães
Source :
Oral diseasesREFERENCES.
Publication Year :
2022

Abstract

Oral squamous cell carcinoma (OSCC) is one of the most common neoplasms worldwide. The current study aimed to identify potential biomarkers associated with OSCC survival.Differentially expressed genes (DEGs) in atypical OSCC cases were identified using two public datasets: The Cancer Genome Atlas and the Gene Expression Omnibus database. Receiver operating characteristic (ROC) analysis was performed to identify the cutoff, and the candidate DEGs related to survival. Kaplan-Meier and Cox regression analysis using the categorized genes were employed to identify genes that impact the overall survival in OSCC.A total of 263 OSCC samples and 105 healthy tissues were used to identify 295 upregulated and 131 downregulated genes expressed only in non-smokers. ROC analyses identified 25 candidate genes associated with death. Survival analyses demonstrated that the following DEGs, namely CSTA, FGFR2, MMP19, OLR1, PCSK1, RAMP2, and CGB5, are potential OSCC prognostic factors.We found that CSTA, FGFR2, MMP19, OLR1, PCSK1, RAMP2, and CGB5 are associated with a low survival rate in OSCC. However, further studies are needed to validate our findings and facilitate the development of these factors as potential biomarkers for OSCC survival.

Details

ISSN :
16010825
Database :
OpenAIRE
Journal :
Oral diseasesREFERENCES
Accession number :
edsair.doi.dedup.....6c718b9689da5b8aab39a16290afed65