Back to Search Start Over

Next generation sequencing yields complete mitogenomes of Leopard whipray (Himantura leoparda) and Blue-spotted stingray (Neotrygon kuhlii) (Chondrichthyes: Dasyatidae)

Authors :
Ching-Hung Chen
Chih-Wei Chang
Philippe Borsa
Shan-Chun Wu
Zi-Han Lin
Kang-Ning Shen
Shiou-Yi Tsai
Yen-Fan Chan
Chung-Der Hsiao
Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung
National Taiwan Ocean University (NTOU)
Department of Biology, National Museum of Marine Biology and Aquarium, Checheng
National Museum of Marine Biology and Aquarium
Chung Yuan Christian University
WeThink Biotech Inc., Taoyuan, Taiwan
Ecologie marine tropicale des océans Pacifique et Indien (ENTROPIE [Nouvelle-Calédonie])
Institut de Recherche pour le Développement (IRD [Nouvelle-Calédonie])-Ifremer - Nouvelle-Calédonie
Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de la Nouvelle-Calédonie (UNC)
NTOU
Source :
Mitochondrial DNA Part A, Mitochondrial DNA Part A, Taylor and Francis, 2016, 27, pp.2613-2614. ⟨10.3109/19401736.2015.1041119⟩
Publication Year :
2016
Publisher :
HAL CCSD, 2016.

Abstract

International audience; The Leopard whipray (Himantura leoparda) and Blue-spotted stingray (Neotrygon kuhlii) are distributed in the Indian and West Pacific Ocean and considered as species complexes based on morphological and molecular evidence. In this study, we used the next-generation sequencing method to decipher the two complete mitogenomes of H. leoparda and N. kuhlii. The assembled mitogenomes had a length of 17,690 bp in H. leoparda and 17,974 bp in N. kuhlii, and showed 78% identity to each other. Both mitogenomes had the typical vertebrate arrangement, including 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNAs genes and the non-coding control region. The control region, which was 1931-bp long in H. leoparda and 2243-bp long in N. kuhlii was located between the tRNA-Pro and tRNA-Phe loci. The overall GC content was 40.3% in H. leoparda and 39.8% in N. kuhlii. The complete mitogenome sequences of H. leoparda and N. kuhlii provide important molecular data for further phylogenetic and evolutionary analyses of these two stingray species complexes.

Details

Language :
English
ISSN :
24701394 and 24701408
Database :
OpenAIRE
Journal :
Mitochondrial DNA Part A, Mitochondrial DNA Part A, Taylor and Francis, 2016, 27, pp.2613-2614. ⟨10.3109/19401736.2015.1041119⟩
Accession number :
edsair.doi.dedup.....6f4a0155e1e3c6c2cb05007c8fbf8ee2
Full Text :
https://doi.org/10.3109/19401736.2015.1041119⟩