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Genetic adaptation to pathogens and increased risk of inflammatory disorders in post-Neolithic Europe

Authors :
Gaspard Kerner
Anna-Lena Neehus
Quentin Philippot
Jonathan Bohlen
Darawan Rinchai
Nacim Kerrouche
Anne Puel
Shen-Ying Zhang
Stéphanie Boisson-Dupuis
Laurent Abel
Jean-Laurent Casanova
Etienne Patin
Guillaume Laval
Lluis Quintana-Murci
Génétique Evolutive Humaine - Human Evolutionary Genetics
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
Imagine - Institut des maladies génétiques (IHU) (Imagine - U1163)
Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité)
St. Giles Laboratory of Human Genetics of Infectious Diseases
Rockefeller University [New York]
Institut Pasteur
Collège de France
Centre National de la Recherche Scientifique
Investissements d'Avenir
Fondation pour la Recherche Médicale (Equipe FRM DEQ20180339214)
Fondation Allianz-Institut de France
Fondation de France (00106080)
Gaspard Kerner was supported by a Pasteur-Roux-Cantarini fellowship
ANR-19-CE15-0009,CNSVIRGEN,Déficits immunitaires innés dans les infections sévères du tronc cérébral(2019)
ANR-19-CE35-0005,MORTUI,Impact des Pandémies Passées sur l'Evolution de l'Homme : Une Etude Archéo-Génomique des Victimes de la Peste Noire(2019)
ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010)
ANR-17-CE12-0018,LifeChange,Déchiffrer les conséquences biologiques et pathogéniques liées à un changement majeur de mode de vie(2017)
ANR-10-LABX-0069,MILIEU INTERIEUR,GENETIC & ENVIRONMENTAL CONTROL OF IMMUNE PHENOTYPE VARIANCE: ESTABLISHING A PATH TOWARDS PERSONALIZED MEDICINE(2010)
Source :
Cell Genomics, Cell Genomics, 2023, 3 (2), pp.100248. ⟨10.1016/j.xgen.2022.100248⟩
Publication Year :
2023
Publisher :
Elsevier BV, 2023.

Abstract

International audience; Ancient genomics can directly detect human genetic adaptation to environmental cues. However, it remains unclear how pathogens have exerted selective pressures on human genome diversity across different epochs and affected present-day inflammatory disease risk. Here, we use an ancestry-aware approximate Bayesian computation framework to estimate the nature, strength, and time of onset of selection acting on 2,879 ancient and modern European genomes from the last 10,000 years. We found that the bulk of genetic adaptation occurred after the start of the Bronze Age

Details

ISSN :
2666979X
Volume :
3
Database :
OpenAIRE
Journal :
Cell Genomics
Accession number :
edsair.doi.dedup.....7041d8f906d1d6f0a43aa527dd000ced