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Genetic susceptibility variants for lung cancer: replication study and assessment as expression quantitative trait loci
- Source :
- Scientific reports (Nature Publishing Group) 7 (2017). doi:10.1038/srep42185, info:cnr-pdr/source/autori:Pintarelli, Giulia; Cotroneo, Chiara Elisabetta; Noci, Sara; Dugo, Matteo; Galvan, Antonella; Delli Carpini, Simona; Citterio, Lorena; Manunta, Paolo; Incarbone, Matteo; Tosi, Davide; Santambrogio, Luigi; Dragani, Tommaso A.; Colombo, Francesca/titolo:Genetic susceptibility variants for lung cancer: Replication study and assessment as expression quantitative trait loci/doi:10.1038%2Fsrep42185/rivista:Scientific reports (Nature Publishing Group)/anno:2017/pagina_da:/pagina_a:/intervallo_pagine:/volume:7, Scientific Reports
- Publication Year :
- 2017
- Publisher :
- Springer Science and Business Media LLC, 2017.
-
Abstract
- Many single nucleotide polymorphisms (SNPs) have been associated with lung cancer but lack confirmation and functional characterization. We retested the association of 56 candidate SNPs with lung adenocarcinoma risk and overall survival in a cohort of 823 Italian patients and 779 healthy controls, and assessed their function as expression quantitative trait loci (eQTLs). In the replication study, eight SNPs (rs401681, rs3019885, rs732765, rs2568494, rs16969968, rs6495309, rs11634351, and rs4105144) associated with lung adenocarcinoma risk and three (rs9557635, rs4105144, and rs735482) associated with survival. Five of these SNPs acted as cis-eQTLs, being associated with the transcription of IREB2 (rs2568494, rs16969968, rs11634351, rs6495309), PSMA4 (rs6495309) and ERCC1 (rs735482), out of 10,821 genes analyzed in lung. For these three genes, we obtained experimental evidence of differential allelic expression in lung tissue, pointing to the existence of in-cis genomic variants that regulate their transcription. These results suggest that these SNPs exert their effects on cancer risk/outcome through the modulation of mRNA levels of their target genes.
- Subjects :
- Adult
Male
0301 basic medicine
Proteasome Endopeptidase Complex
Lung Neoplasms
Quantitative Trait Loci
SNP
Adenocarcinoma of Lung
Single-nucleotide polymorphism
Adenocarcinoma
Biology
Polymorphism, Single Nucleotide
survival
Article
03 medical and health sciences
0302 clinical medicine
lung adenocarcinoma risk
medicine
Genetic predisposition
Humans
Genetic Predisposition to Disease
Allele
Lung cancer
Iron Regulatory Protein 2
Gene
Aged
Aged, 80 and over
Genetics
Multidisciplinary
Middle Aged
Endonucleases
medicine.disease
DNA-Binding Proteins
Gene Expression Regulation, Neoplastic
030104 developmental biology
030220 oncology & carcinogenesis
Expression quantitative trait loci
differential allelic expression
Female
ERCC1
Genome-Wide Association Study
Subjects
Details
- ISSN :
- 20452322
- Volume :
- 7
- Database :
- OpenAIRE
- Journal :
- Scientific Reports
- Accession number :
- edsair.doi.dedup.....71a1745b4441c9921d688804c6802751