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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Authors :
László Nagy
Luis F. Larrondo
Daniel C. Eastwood
Ad Wiebenga
Ángel T. Martínez
Darcy Young
Isabelle Benoit
Chiaki Hori
Robert Riley
Erika Lindquist
Ronald P. de Vries
Grzegorz Sabat
Rachael Martin
Robin A. Ohm
Kurt LaButti
Dan Cullen
Pedro M. Coutinho
Susan Lucas
Alan Kuo
Vincent Lombard
Joel A. Jurgens
Jill Gaskell
Andrea Aerts
Jan Stenlid
Alexis Carlson
David S. Hibbett
Hui Sun
Brian Foster
Robert Otillar
Francisco J. Ruiz-Dueñas
Manfred Binder
Dylan Glotzer
Patricia Ferreira
Ingo Morgenstern
Francis Martin
Jason C. Slot
T. K. Arun Kumar
Matthew J Nolan
Taina Lundell
Phil Kersten
Aleksandrina Patyshakuliyeva
Khajamohiddin Syed
Antonis Rokas
Jagjit S. Yadav
Robert A. Blanchette
Franz J. St John
Jeremy Schmutz
Joseph W. Spatafora
Igor V. Grigoriev
Antonio G. Pisabarro
Emanuelle Morin
Sheng Sun
Albee Y. Ling
Bernard Henrissat
Adrian Tsang
Annegret Kohler
Dimitrios Floudas
Masahiro Samejima
Cedar N. Hesse
Alexander Boyd
Keisha Findley
Nathan M Kallen
Kerrie Barry
Kiyohiko Igarashi
Paweł Górecki
Claude Murat
Ursula Kües
Joseph Heitman
Asaf Salamov
Alex Copeland
David J. McLaughlin
Biology Department
Clark University
Joint Genome Institute
United States Department of Energy
Department of Plant Pathology
University of Minnesota [Twin Cities]
University of Minnesota System-University of Minnesota System
Architecture et fonction des macromolécules biologiques (AFMB)
Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)
Centro de investigaciones biológicas
Spanish National Research Council (CSIC)
Department of Botany and Plant Pathology
Oregon State University (OSU)
College of Medicine, Department of Environmental Health, Environmental Genetics and Molecular Toxicology Division
University of Cincinnati (UC)
Microbiology and Kluyver Centre for Genomics of Industrial Fermentation
Utrecht University [Utrecht]
CBS-KNAW Fungal Biodiversity Centre
Department of Biochemistry and Molecular and Cellular Biology and Institute of Biocomputation and Physics of Complex Systems
University of Zaragoza - Universidad de Zaragoza [Zaragoza]
Medical Center, Department of Molecular Genetics and Microbiology
Duke University [Durham]
Forest Products Laboratory
United States Department of Agriculture
Institute of Informatics
University of Warsaw (UW)
Graduate School of Agricultural and Life Sciences, Department of Biomaterial Sciences
The University of Tokyo
Interactions Arbres-Microorganismes (IAM)
Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA)
Université Henri Poincaré - Nancy 1 (UHP)
Molecular Wood Biotechnology and Technical Mycology, Büsgen-Institute
Georg-August-University [Göttingen]
Department of Plant Biology
Facultad de Ciencias Biológicas, Departamento de Genética Molecular y Microbiología
Pontificia Universidad Católica de Chile (UC)
Viikki Plant Science Centre (ViPS)
Faculty of Biological and Environmental Sciences [Helsinki]
University of Helsinki-University of Helsinki
Centre for Structural and Functional Genomics
Concordia University [Montreal]
Department of Biological Sciences
Vanderbilt University [Nashville]
Biotechnology Center
University of Wisconsin
Hudson Alpha Institute for Biotechnology
Department of Forest Mycology and Pathology
Swedish University of Agricultural Sciences (SLU)
Genetics and Microbiology Research Group
Public University of Navarre
College of Science
Swansea University
Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]
Assembling the Fungal Tree of Life (AFTOL) project under NSF [DEB-0732968, DEB-0732993, DEB-0732550]
University of Minnesota [Twin Cities] (UMN)
Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA)
Institute of Informatics [Warsaw]
Faculty of Mathematics, Informatics, and Mechanics [Warsaw] (MIMUW)
University of Warsaw (UW)-University of Warsaw (UW)
Graduate School of Agricultural and Life Sciences [UTokyo] (GSALS)
The University of Tokyo (UTokyo)
Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL)
University of Wisconsin-Madison
Department of Forest Mycology and Plant Pathology
College of Science [Swansea]
Georg-August-University = Georg-August-Universität Göttingen
Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Helsingin yliopisto = Helsingfors universitet = University of Helsinki
Universidad Pública de Navarra [Espagne] = Public University of Navarra (UPNA)
Source :
Digital.CSIC. Repositorio Institucional del CSIC, instname, Science Magazine, 336(6089), 1715-1719. American Association for the Advancement of Science (AAAS), Science, Science, American Association for the Advancement of Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩, Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Publication Year :
2012
Publisher :
American Association for the Advancement of Science, 2012.

Abstract

5 páginas, 1 figura, 1 tabla, 22 figuras suplementarias, 16 tablas suplementarias -- PAGS nros. 1715-1719 et al.<br />Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal genomes (12 generated for this study) suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species. Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period<br />The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of the U.S. Department of Energy under contract DE-AC02-05CH11231. Also supported by the Assembling the Fungal Tree of Life (AFTOL) project under NSF awards DEB-0732968 (D.S.H.), DEB-0732993 (J.W.S.), and DEB-0732550 (D.J.M.).

Details

ISSN :
00368075 and 10959203
Database :
OpenAIRE
Journal :
Digital.CSIC. Repositorio Institucional del CSIC, instname, Science Magazine, 336(6089), 1715-1719. American Association for the Advancement of Science (AAAS), Science, Science, American Association for the Advancement of Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩, Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Accession number :
edsair.doi.dedup.....76c15dc74c79c10fb431c0bf6f2b8ba4