Additional file 1 of Metagenomic insights into the microbe-mediated B and K2 vitamin biosynthesis in the gastrointestinal microbiome of ruminants

Additional file 1: Fig. S1. The biosynthesis pathway of thiamine. Fig. S2. The biosynthesis pathway of riboflavin. Fig. S3. The biosynthesis pathway of niacin. Fig. S4. The biosynthesis pathway of pantothenate. Fig. S5. The biosynthesis pathway of pyridoxine. Fig. S6. The biosynthesis pathway of biotin. Fig. S7. The biosynthesis pathway of folate. Fig. S8. The biosynthesis pathway of cobalamin. Fig. S9. The biosynthesis pathway of menaquinone. Fig. S10. Variability in differences of vitamin biosynthesis explained by regions and species. Fig. S11. Chord plot of the distribution of vitamin biosynthetic genes among different phyla. Fig. S12. Phylogenetic distribution of vitamin biosynthetic genes at the genus level throughout the GIT regions. Fig. S13. The important indicators for regional heterogeneity identified by Random Forest model. Fig. S14. The detection of causal interactions between structure of GIT microbiota and vitamin biosynthesis pathway. Fig. S15. Vitamin synthesis capabilities of 31 genomes assigned to the genera Salmonella and Escherichia. Fig. S16. Variability in differences of vitamin biosynthesis explained by diets. Fig. S17. The detection of causal interactions between Bacteroides and Fibrobacter and cobalamin biosynthesis. Fig. S18. The important indicators for dietary shifts identified by Random Forest model.