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Gorillibacterium timonense sp. nov., isolated from an obese patient
- Source :
- Archives of Microbiology, Archives of Microbiology, 2020, ⟨10.1007/s00203-020-01834-x⟩, Archives of Microbiology, Springer Verlag, 2020, ⟨10.1007/s00203-020-01834-x⟩
- Publication Year :
- 2020
- Publisher :
- HAL CCSD, 2020.
-
Abstract
- International audience; A Gram-negative and facultative anaerobic bacterium, designated strain SN4T, was isolated from the stool sample of an obese Amazonian patient. The new isolate was characterized by the taxonogenomics approach. The strain SN4T was beige-colored, circular and not haemolytic. Cells are rod shaped and motile with several flagella. Strain SN4T grows optimally at pH 7 and can survive in the presence of a saline concentration of up to 75 g/l NaCl. The 16S ribosomal RNA gene sequence analysis of the novel strain SN4T showed 95.28% similarity in nucleotide sequence with Gorillibacterium massiliense G5T, the phylogenetically closest neighbor and the type species of this genus. Anteiso-C15:0, iso-C15:0 and C16:0 were found as the major components in the cellular fatty acid analysis of this isolate. The genomic draft of strain SN4T is 5,263,742 bp long with 53.33% of G+C content. The differences in physiological, biochemical characteristics and phylogenetic and genomic data make it possible to clearly distinguish the strain SN4T from G. massiliense G5T. Based on the taxonogenomic description and the phenotypic and biochemical characteristics of this bacterium presented in this article, we propose the SN4T strain (= CSUR P2011 = DSM 100,698) as a new species, Gorillibacterium timonense sp. nov.
- Subjects :
- DNA, Bacterial
Flagellum
Biochemistry
Microbiology
03 medical and health sciences
Feces
Species Specificity
[SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system
[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases
RNA, Ribosomal, 16S
Genetics
Humans
[SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology
Obesity
Molecular Biology
Phylogeny
030304 developmental biology
chemistry.chemical_classification
0303 health sciences
Bacillales
Base Composition
[SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases
Genome
biology
Phylogenetic tree
Strain (chemistry)
Taxonogenomics
030306 microbiology
Fatty Acids
Nucleic acid sequence
Fatty acid
General Medicine
Genomics
Sequence Analysis, DNA
Gorillibacterium timonense
biology.organism_classification
16S ribosomal RNA
[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
Type species
chemistry
[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology
Bacteria
Human gut microbiota
Subjects
Details
- Language :
- English
- ISSN :
- 03028933 and 1432072X
- Database :
- OpenAIRE
- Journal :
- Archives of Microbiology, Archives of Microbiology, 2020, ⟨10.1007/s00203-020-01834-x⟩, Archives of Microbiology, Springer Verlag, 2020, ⟨10.1007/s00203-020-01834-x⟩
- Accession number :
- edsair.doi.dedup.....77979653bef5b289660f09962d59a558
- Full Text :
- https://doi.org/10.1007/s00203-020-01834-x⟩