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Supplemental Methods, Tables 1 - 3, Figures 1 - 16 from Identification of Chimeric Antigen Receptors That Mediate Constitutive or Inducible Proliferation of T Cells

Authors :
Carl H. June
Michael C. Milone
Michael Kalos
Yangbing Zhao
Chrystal M. Paulos
F. Brad Johnson
Jesse M. Platt
Laurence J.N. Cooper
Sonny Ang
Avery D. Posey
Shannon E. McGettigan
Sonia Guedan
Omkar U. Kawalekar
John Scholler
Shinichiro Motohashi
Carmine Carpenito
Maria Ciocca Basil
Jihyun Lee
Matthew J. Frigault
Publication Year :
2023
Publisher :
American Association for Cancer Research (AACR), 2023.

Abstract

Table S1: Expression of c-Met and Mesothelin mRNA in activated CD4 T Cells. Table S2: Genes upregulated in CD4+ T cells of healthy human adults expressing c-Met IgG4 continuous CAR or CD19 CD8α non-continuous CAR on day 11. Table S3: Genes downregulated in CD4+ T cells of healthy human adults expressing c-Met IgG4 continuous CAR or CD19 CD8α non-continuous CAR on day 11. Figure S1. Chimeric antigen receptor constructs and relative expression levels. Figure S2. CAR T cells with constitutive proliferation retain specific cytotoxicity. Figure S3. c-Met and mesothelin expression are not detected on human CD4+ T cells. Figure S4. Supernatant from CARs displaying the growth phenotype induces activation of naïve unstimulated T cells. Figure S5.The role of fetal bovine serum in the constitutive growth of c-Met IgG4 28ζ CAR T cells. Figure S6. A) CARs with a constitutive growth phenotype display a unique gene signature. B) CAR T cells with a constitutive growth phenotype display distinct transcription factors. Figure S7. Genome-wide microarray analysis of CAR T cells with constitutive proliferation. Figure S8. Distinct gene expression signature of CAR T cells with constitutive proliferation. Figure S9. CAR T cells with constitutive proliferation have ligand-independent NFAT activation. Figure S10. Transgene expression levels are sufficient to convey the constitutive CAR growth phenotype. Figure S11. Constitutive CAR T cell proliferation results in differentiation and evolution of a distinct cell surface phenotype. Figure S12. Effects of stimulation and cell culture on differentiation of non-transduced T cells. Figure S13. Temporal patterns of telomere restriction fragment length (TRF) in continuous CAR T cells and mock transduced T cells. Figure S14. CAR T cells with a constitutive growth phenotype retain a diverse TCR Vβ repertoire. Figure S15. Engraftment and proliferation of continuous CAR T cells in NSG mice. Figure S16. PGK100 promoter results in antigen driven accumulation of CAR T cells in tissue but not blood.

Details

Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....797fb8c4889476e2f5c1dda3bbd54ca6