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The UCSC Cancer Genomics Browser: update 2015
- Source :
- Nucleic Acids Research
- Publication Year :
- 2014
- Publisher :
- Oxford University Press, 2014.
-
Abstract
- The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227 000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan–Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others.
- Subjects :
- Genomics
Kaplan-Meier Estimate
Biology
World Wide Web
03 medical and health sciences
Upload
0302 clinical medicine
Cell Line, Tumor
Neoplasms
Databases, Genetic
Genetics
medicine
Database Issue
Humans
natural sciences
Child
030304 developmental biology
0303 health sciences
Internet
business.industry
Cancer
medicine.disease
Genomic biomarkers
3. Good health
Visualization
Phenotype
030220 oncology & carcinogenesis
The Internet
business
Subjects
Details
- Language :
- English
- ISSN :
- 13624962 and 03051048
- Volume :
- 43
- Database :
- OpenAIRE
- Journal :
- Nucleic Acids Research
- Accession number :
- edsair.doi.dedup.....814174336a097b8a21663c42820c0ac3