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Correlative microscopy combining secondary ion mass spectrometry and electron microscopy: Comparison of intensity-hue-saturation and Laplacian pyramid methods for image fusion

Authors :
Tom Wirtz
Jean-Nicolas Audinot
Florian Vollnhals
Varda Lev-Ram
Birgit Schroeppel
Mark H. Ellisman
Udo Kraushaar
Isabelle Fourquaux
Santhana Eswara
Muriel Mercier-Bonin
Luxembourg Institute of Science and Technology (LIST)
Neuro-Gastroentérologie & Nutrition (ToxAlim-NGN)
ToxAlim (ToxAlim)
Université Toulouse III - Paul Sabatier (UT3)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP)
Université Fédérale Toulouse Midi-Pyrénées-Ecole Nationale Vétérinaire de Toulouse (ENVT)
Institut National Polytechnique (Toulouse) (Toulouse INP)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Ecole d'Ingénieurs de Purpan (INPT - EI Purpan)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Recherche Agronomique (INRA)
Centre de Microscopie Électronique Appliquée à la Biologie (CMEAB)
Hôpital de Rangueil
CHU Toulouse [Toulouse]-CHU Toulouse [Toulouse]-Toulouse Réseau Imagerie-Genotoul ( TRI-Genotoul)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Toulouse III - Paul Sabatier (UT3)
Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen
Department of pharmacology
University of California [San Diego] (UC San Diego)
University of California-University of California
University of California
This work was funded by the National Research Fund Luxembourg (FNR) within the framework of the HELION project through grant C14/MS/8345352 and the C4HEALTH project through grant INTER/MERA/14/9822270. We thank Tom Deerinck and Eric Bushong of NCMIR for preparing samples from the isotopic-fed mouse brain samples and carrying out the high-resolution SEM imaging. NCMIR is supported by the US NIH P41GM103412 (to METE). The 15N-labeled mice were produced as part of work on an award from the US NIH to study long-lived molecules and memory mechanisms in the brain, NIH RO1 NS027177I
Source :
Analytical Chemistry, Analytical Chemistry, American Chemical Society, 2017, 89 (20), pp.10702-10710. ⟨10.1021/acs.analchem.7b01256⟩
Publication Year :
2017
Publisher :
HAL CCSD, 2017.

Abstract

International audience; Correlative microscopy combining various imaging modalities offers powerful insights into obtaining a comprehensive understanding of physical, chemical, and biological phenomena. In this article, we investigate two approaches for image fusion in the context of combining the inherently lower-resolution chemical images obtained using secondary ion mass spectrometry (SIMS) with the high-resolution ultrastructural images obtained using electron microscopy (EM). We evaluate the image fusion methods with three different case studies selected to broadly represent the typical samples in life science research: (i) histology (unlabeled tissue), (ii) nanotoxicology, and (iii) metabolism (isotopically labeled tisue). We show that the intensity-hue-saturation fusion method often applied for EM-sharpening can result in serious image artifacts, especially in cases where different contrast mechanisms interplay. Here, we introduce and demonstrate Laplacian pyramid fusion as a powerful and more robust alternative method for image fusion. Both physical and technical aspects of correlative image overlay and image fusion specific to SIMS-based correlative microscopy are discussed in detail alongside the advantages, limitations, and the potential artifacts. Quantitative metrics to "evaluate the results of image fusion are also discussed.

Details

Language :
English
ISSN :
00032700 and 15206882
Database :
OpenAIRE
Journal :
Analytical Chemistry, Analytical Chemistry, American Chemical Society, 2017, 89 (20), pp.10702-10710. ⟨10.1021/acs.analchem.7b01256⟩
Accession number :
edsair.doi.dedup.....82747731271e1cba3127b033cdaea821