Additional file 2 of A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine

Additional file 2: Figure S2. Correlation across boar sperm quality traits. Heatmap plot of the correlations among the 25 sperm traits measured on 300 boars. CON = concentration; VIAB_5 = viability 5 min; VIAB_90 = viability 90 min; ORT = osmotic resistance test; HABN = head abnormalities; NABN = neck abnormalities; TABN = tail abnormalities; PDROP = proximal droplets; DDROP = distal droplets; MT_5 = motility 5 min; VAP_5 = average path velocity 5 min; VCL_5 = curvilinear velocity 5 min; VSL_5 = straight line velocity 5 min; MT_90 = motility 90 min; VAP_90 = average path velocity 90 min; VCL_90 = curvilinear velocity 90 min; VSL_90 = straight line velocity 90 min; ACRO_5 = abnormal acrosomes 5 min; ACRO_90 = abnormal acrosomes 90 min; R_MT = ratio motility; R_VAP = ratio average path velocity; R_VCL = ratio curvilinear velocity; R_VSL = ratio straight line velocity; R_VIAB = ratio viability; R_ACRO = ratio acrosomes. Figure S3. SNP based dendrogram for the 25 semen parameters. Dendrogram of the standardized SNP effects across the 25 sperm traits.