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The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
- Source :
- Mitochondrial DNA. Part B, Resources, article-version (VoR) Version of Record
- Publication Year :
- 2018
- Publisher :
- Taylor & Francis, 2018.
-
Abstract
- Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Whole genome sequencing
Hosta capitata
phylogenetic analysis
Biology
biology.organism_classification
010603 evolutionary biology
01 natural sciences
Hosta capitata (Koidz.) Nakai
Herbaceous perennial
Chloroplast
03 medical and health sciences
030104 developmental biology
Asparagaceae
Botany
Ornamental plant
Genetics
chloroplast genome
Molecular Biology
Mitogenome Announcement
Research Article
Subjects
Details
- Language :
- English
- ISSN :
- 23802359
- Volume :
- 3
- Issue :
- 2
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA. Part B, Resources
- Accession number :
- edsair.doi.dedup.....84a2000f94e344c32e498edaf8fee265