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NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments

Authors :
Daniel García Murillo
Yixin Zhao
Ora S. Rogovin
Kelly Zhang
Andrew W. Hu
Mo Re Kim
Shufei Chen
Ziqi Wang
Zoey C. Keeley
Daniel I. Shin
Victor M. Suárez Casanova
Yannan Zhu
Lisandro Martin
Olga Papaemmanouil
Stephen D. Van Hooser
Source :
eneuro. 9:ENEURO.0073-21.2022
Publication Year :
2022
Publisher :
Society for Neuroscience, 2022.

Abstract

Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives.

Details

ISSN :
23732822
Volume :
9
Database :
OpenAIRE
Journal :
eneuro
Accession number :
edsair.doi.dedup.....8526b012e9ab11c9896de7e80f96198e