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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Authors :
Gavin Sherlock
Christian J. Stoeckert
Michael W. Miller
Junmin Liu
Farrell Wymore
Alvis Brazma
Kjell Petersen
Ugis Sarkans
Paul T. Spellman
Ele Holloway
Helen Parkinson
Philippe Rocca-Serra
Anna Farne
Patricia L. Whetzel
Helen C. Causton
Joseph White
Donald Maier
John Quackenbush
Rafael A. Irizarry
Catherine A. Ball
Tim F. Rayner
Source :
BMC Bioinformatics, BMC Bioinformatics, Vol 7, Iss 1, p 489 (2006)
Publication Year :
2006
Publisher :
BioMed Central, 2006.

Abstract

Background Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGE-ML by the MGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. Results We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. Conclusion MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML.

Details

Language :
English
Database :
OpenAIRE
Journal :
BMC Bioinformatics, BMC Bioinformatics, Vol 7, Iss 1, p 489 (2006)
Accession number :
edsair.doi.dedup.....88a607c7d3ce11141e373da3f0a1351e