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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
- Source :
- BMC Bioinformatics, BMC Bioinformatics, Vol 7, Iss 1, p 489 (2006)
- Publication Year :
- 2006
- Publisher :
- BioMed Central, 2006.
-
Abstract
- Background Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGE-ML by the MGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. Results We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. Conclusion MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML.
- Subjects :
- Computer science
computer.internet_protocol
lcsh:Computer applications to medicine. Medical informatics
Biochemistry
03 medical and health sciences
0302 clinical medicine
Software
Structural Biology
Research community
Databases, Genetic
Humans
Microarray databases
lcsh:QH301-705.5
Molecular Biology
Oligonucleotide Array Sequence Analysis
030304 developmental biology
0303 health sciences
SIMPLE (military communications protocol)
Microarray analysis techniques
business.industry
Applied Mathematics
Computational Biology
Data science
Computer Science Applications
lcsh:Biology (General)
Commentary
lcsh:R858-859.7
DNA microarray
Software engineering
business
computer
030217 neurology & neurosurgery
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Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- BMC Bioinformatics, BMC Bioinformatics, Vol 7, Iss 1, p 489 (2006)
- Accession number :
- edsair.doi.dedup.....88a607c7d3ce11141e373da3f0a1351e