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Crystallization and preliminary X-ray diffraction analysis of a novel β-<scp>L</scp>-arabinofuranosidase (HypBA1) fromBifidobacterium longum
- Source :
- Acta Crystallographica Section F Structural Biology Communications. 70:636-638
- Publication Year :
- 2014
- Publisher :
- International Union of Crystallography (IUCr), 2014.
-
Abstract
- The β-L-arabinofuranosidase (HypBA1) fromBifidobacterium longumJCM 1217 hydrolyzes the β-1,2-linked arabinofuranose disaccharide to release L-arabinoses. HypBA1 was classified into glycoside hydrolase family 127 (GH127) by the CAZy website (http://www.cazy.org/). The enzyme was expressed inEscherichia coliand the purified recombinant protein was crystallized. Crystals belonging to the primitive hexagonal space groupP3x21, with unit-cell parametersa=b= 75.9,c= 254.0 Å, were obtained by the sitting-drop vapour-diffusion method and diffracted to 2.78 Å resolution. ABLASTPsearch (http://blast.ncbi.nlm.nih.gov/) of the Protein Data Bank did not reveal any similar crystal structures. Structural determination by using SeMet MAD and MIR methods is in progress.
- Subjects :
- Bifidobacterium longum
CAZy
Glycoside Hydrolases
Stereochemistry
Biophysics
Disaccharide
medicine.disease_cause
digestive system
Biochemistry
chemistry.chemical_compound
fluids and secretions
X-Ray Diffraction
Structural Biology
Genetics
medicine
Glycoside hydrolase
Escherichia coli
Bifidobacterium
chemistry.chemical_classification
biology
food and beverages
computer.file_format
Condensed Matter Physics
biology.organism_classification
Protein Data Bank
Enzyme
chemistry
Crystallization Communications
bacteria
Crystallization
computer
Subjects
Details
- ISSN :
- 2053230X
- Volume :
- 70
- Database :
- OpenAIRE
- Journal :
- Acta Crystallographica Section F Structural Biology Communications
- Accession number :
- edsair.doi.dedup.....88f915492bc93fe372ced06868c05db5
- Full Text :
- https://doi.org/10.1107/s2053230x14001812