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Exact enumeration of cherries and pitchforks in ranked trees under the coalescent model
- Publication Year :
- 2011
-
Abstract
- We consider exact enumerations and probabilistic properties of ranked trees when generated under the random coalescent process. Using a new approach, based on generating functions, we derive several statistics such as the exact probability of finding k cherries in a ranked tree of fixed size n. We then extend our method to consider also the number of pitchforks. We find a recursive formula to calculate the joint and conditional probabilities of cherries and pitchforks when the size of the tree is fixed. These results provide insights into structural properties of coalescent trees under the model of neutral evolution.
- Subjects :
- Statistics and Probability
FOS: Computer and information sciences
Discrete Mathematics (cs.DM)
Enumeration
Population genetics
Binary trees
Coalescent process
Generating function
Neutral model
General Biochemistry, Genetics and Molecular Biology
Coalescent theory
Combinatorics
FOS: Mathematics
Quantitative Biology::Populations and Evolution
Mathematics - Combinatorics
Quantitative Biology - Populations and Evolution
Mathematics
Probability
Binary tree
General Immunology and Microbiology
Applied Mathematics
Probabilistic logic
Populations and Evolution (q-bio.PE)
Conditional probability
General Medicine
Models, Theoretical
Modeling and Simulation
FOS: Biological sciences
Tree (set theory)
Combinatorics (math.CO)
General Agricultural and Biological Sciences
Neutral theory of molecular evolution
Computer Science - Discrete Mathematics
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....8c31182545f33e07d344280b288fdcf2