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Multilevel hybrid split-step implicit tau-leap

Authors :
Chiheb Ben Hammouda
Raul Tempone
Alvaro Moraes
Source :
Numerical Algorithms. 74:527-560
Publication Year :
2016
Publisher :
Springer Science and Business Media LLC, 2016.

Abstract

In biochemically reactive systems with small copy numbers of one or more reactant molecules, the dynamics is dominated by stochastic effects. To approximate those systems, discrete state-space and stochastic simulation approaches have been shown to be more relevant than continuous state-space and deterministic ones. In systems characterized by having simultaneously fast and slow timescales, existing discrete space-state stochastic path simulation methods, such as the stochastic simulation algorithm (SSA) and the explicit tau-leap (explicit-TL) method, can be very slow. Implicit approximations have been developed to improve numerical stability and provide efficient simulation algorithms for those systems. Here, we propose an efficient Multilevel Monte Carlo (MLMC) method in the spirit of the work by Anderson and Higham (SIAM Multiscal Model. Simul. 10(1), 2012). This method uses split-step implicit tau-leap (SSI-TL) at levels where the explicit-TL method is not applicable due to numerical stability issues. We present numerical examples that illustrate the performance of the proposed method.

Details

ISSN :
15729265 and 10171398
Volume :
74
Database :
OpenAIRE
Journal :
Numerical Algorithms
Accession number :
edsair.doi.dedup.....8c887b9e698f9b01e5630f7f813b3874
Full Text :
https://doi.org/10.1007/s11075-016-0158-z