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Multilevel hybrid split-step implicit tau-leap
- Source :
- Numerical Algorithms. 74:527-560
- Publication Year :
- 2016
- Publisher :
- Springer Science and Business Media LLC, 2016.
-
Abstract
- In biochemically reactive systems with small copy numbers of one or more reactant molecules, the dynamics is dominated by stochastic effects. To approximate those systems, discrete state-space and stochastic simulation approaches have been shown to be more relevant than continuous state-space and deterministic ones. In systems characterized by having simultaneously fast and slow timescales, existing discrete space-state stochastic path simulation methods, such as the stochastic simulation algorithm (SSA) and the explicit tau-leap (explicit-TL) method, can be very slow. Implicit approximations have been developed to improve numerical stability and provide efficient simulation algorithms for those systems. Here, we propose an efficient Multilevel Monte Carlo (MLMC) method in the spirit of the work by Anderson and Higham (SIAM Multiscal Model. Simul. 10(1), 2012). This method uses split-step implicit tau-leap (SSI-TL) at levels where the explicit-TL method is not applicable due to numerical stability issues. We present numerical examples that illustrate the performance of the proposed method.
- Subjects :
- Work (thermodynamics)
Applied Mathematics
Numerical analysis
Monte Carlo method
Numerical Analysis (math.NA)
010103 numerical & computational mathematics
01 natural sciences
010101 applied mathematics
60J75, 60J27, 65G20, 92C40
Stochastic simulation
Path (graph theory)
Theory of computation
FOS: Mathematics
Applied mathematics
Mathematics - Numerical Analysis
0101 mathematics
Reactive system
Mathematics
Numerical stability
Subjects
Details
- ISSN :
- 15729265 and 10171398
- Volume :
- 74
- Database :
- OpenAIRE
- Journal :
- Numerical Algorithms
- Accession number :
- edsair.doi.dedup.....8c887b9e698f9b01e5630f7f813b3874
- Full Text :
- https://doi.org/10.1007/s11075-016-0158-z