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On the temperature dependence of H-U iso in the riding hydrogen model
- Source :
- Acta Crystallographica. Section A, Foundations and Advances
- Publication Year :
- 2014
- Publisher :
- International Union of Crystallography, 2014.
-
Abstract
- The temperature dependence of hydrogen U iso and parent U eq in the riding hydrogen model is investigated by neutron diffraction, aspherical-atom refinements and QM/MM and MO/MO cluster calculations. Fixed values of 1.2 or 1.5 appear to be underestimated, especially at temperatures below 100 K.<br />The temperature dependence of H-U iso in N-acetyl-l-4-hydroxyproline monohydrate is investigated. Imposing a constant temperature-independent multiplier of 1.2 or 1.5 for the riding hydrogen model is found to be inaccurate, and severely underestimates H-U iso below 100 K. Neutron diffraction data at temperatures of 9, 150, 200 and 250 K provide benchmark results for this study. X-ray diffraction data to high resolution, collected at temperatures of 9, 30, 50, 75, 100, 150, 200 and 250 K (synchrotron and home source), reproduce neutron results only when evaluated by aspherical-atom refinement models, since these take into account bonding and lone-pair electron density; both invariom and Hirshfeld-atom refinement models enable a more precise determination of the magnitude of H-atom displacements than independent-atom model refinements. Experimental efforts are complemented by computing displacement parameters following the TLS+ONIOM approach. A satisfactory agreement between all approaches is found.
- Subjects :
- Diffraction
ONIOM
Electron density
Hydrogen
Hirshfeld-atom refinement
Neutron diffraction
chemistry.chemical_element
Synchrotron radiation
Biochemistry
law.invention
Inorganic Chemistry
riding hydrogen model
neutron diffraction
QM/MM computations
invariom refinement
synchrotron radiation
Structural Biology
law
General Materials Science
Neutron
Physical and Theoretical Chemistry
Physics
Condensed Matter Physics
Research Papers
Synchrotron
3. Good health
Computational physics
Crystallography
chemistry
Subjects
Details
- Language :
- English
- ISSN :
- 20532733
- Volume :
- 70
- Issue :
- Pt 4
- Database :
- OpenAIRE
- Journal :
- Acta Crystallographica. Section A, Foundations and Advances
- Accession number :
- edsair.doi.dedup.....8ed8242325a7dc5ec9eb416031850ace