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Genome and transcriptome assemblies of the kuruma shrimp,Marsupenaeus japonicus
- Source :
- G3: Genes|Genomes|Genetics, G3: Genes, Genomes, Genetics, Vol 11, Iss 11 (2021)
- Publication Year :
- 2021
- Publisher :
- Oxford University Press (OUP), 2021.
-
Abstract
- The kuruma shrimp Marsupenaeus japonicus (order Decapoda, family Penaeidae) is an economically important crustacean that occurs in shallow, warm seas across the Indo-Pacific. Here, using a combination of Illumina and Oxford Nanopore Technologies platforms, we produced a draft genome assembly of M. japonicus (1.70 Gbp; 18,210 scaffolds; scaffold N50 = 234.9 kbp; 34.38% GC, 93.4% BUSCO completeness) and a complete mitochondrial genome sequence (15,969 bp). As with other penaeid shrimp genomes, the M. japonicus genome is extremely rich in simple repeats, which occupies 27.4% of the assembly. A total of 26,381 protein-coding gene models (94.7% BUSCO completeness) were predicted, of which 18,005 genes (68.2%) were assigned functional description by at least one method. We also produced an Illumina-based transcriptome shotgun assembly (40,991 entries; 93.0% BUSCO completeness) and a PacBio Iso-Seq transcriptome assembly (25,415 entries; 67.5% BUSCO completeness). We envision that the M. japonicus genome and transcriptome assemblies will serve as useful resources for the basic research, fisheries management, and breeding programs of M. japonicus.
- Subjects :
- AcademicSubjects/SCI01140
Penaeidae
genome annotation
AcademicSubjects/SCI00010
Marsupenaeus japonicus
Sequence assembly
Marsupenaeus
kuruma prawn
transcriptome assembly
Computational biology
QH426-470
AcademicSubjects/SCI01180
Genome
DNA sequencing
Transcriptome
Genetics
Penaeus japonicus
Animals
Molecular Biology
Genetics (clinical)
biology
High-Throughput Nucleotide Sequencing
Sequence Analysis, DNA
Genome project
biology.organism_classification
Genome Report
Shrimp
genome sequencing
AcademicSubjects/SCI00960
penaeid shrimp
Subjects
Details
- ISSN :
- 21601836
- Volume :
- 11
- Database :
- OpenAIRE
- Journal :
- G3 Genes|Genomes|Genetics
- Accession number :
- edsair.doi.dedup.....9042ea59b5bc81568bdab2c69633fd05