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First high-quality draft genome of Ochrobactrum haematophilum P6BS-III, a highly glyphosate-tolerant strain isolated from agricultural soil in Argentina
- Source :
- 3 Biotech. 9
- Publication Year :
- 2019
- Publisher :
- Springer Science and Business Media LLC, 2019.
-
Abstract
- We report here on a high-quality draft genome sequence of Ochrobactrum haematophilum strain P6BS-III (DSM 106071), a Gram negative, non-sporulating bacterium isolated from a pastureland (Buenos Aires province, Argentina) which had been chronically exposed to the herbicide glyphosate. The genome of 5.25 Mb with a DNA G+C content of 56.63% size was estimated to contain 5,291 protein coding genes and 57 RNA genes. Genome analysis revealed the presence of the phn operon, which is involved in the phosphonate degradation pathway, and a class II 5-enolpyruvylshikimate-3-phosphate synthase (EPSP) that confers tolerance to glyphosate. Genes related to plant growth promotion traits are also present, and include genes for phosphorus metabolism, calcium phosphate and phytate solubilization, siderophore production, organic acid biosynthesis and indole acetic acid (IAA) production. Fil: Massot, Francisco. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Nanobiotecnología. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Nanobiotecnología; Argentina. Hasselt University; Bélgica Fil: Gkorezis, Panagiotis. Hasselt University; Bélgica Fil: McAmmond, Breanne. Thompson Rivers University; Canadá Fil: d´Haen, Jan. Hasselt University; Bélgica Fil: Van Hamme, Jonathan. Thompson Rivers University; Canadá Fil: Merini, Luciano Jose. Instituto Nacional de Tecnología Agropecuaria. Centro Regional La Pampa-San Luis. Estación Experimental Agropecuaria Anguil; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Vangronsveld, Jaco. Hasselt University; Bélgica Fil: Thijs, Sofie. Hasselt University; Bélgica
- Subjects :
- Siderophore
Operon
GLYPHOSATE
Environmental Science (miscellaneous)
Biology
Genome
Microbiology
Phosphorus metabolism
Ciencias Biológicas
03 medical and health sciences
chemistry.chemical_compound
Biología Celular, Microbiología
Ochrobactrum haematophilum
Gene
030304 developmental biology
2. Zero hunger
Whole genome sequencing
0303 health sciences
030306 microbiology
Agricultural and Biological Sciences (miscellaneous)
PLANT GROWTH PROMOTION
chemistry
Glyphosate
5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE
OCHROBACTRUM HAEMATOPHILUM
SOIL CONTAMINATION
Genome Reports
CIENCIAS NATURALES Y EXACTAS
5-Enolpyruvylshikimate-3-phosphate synthase
Soil contamination
Plant growth promotion
Biotechnology
Subjects
Details
- ISSN :
- 21905738 and 2190572X
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- 3 Biotech
- Accession number :
- edsair.doi.dedup.....94dcb0ffdef8e0456dacb789a05faf26