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Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants
- Source :
- Standards in Genomic Sciences, Standards in Genomic Sciences, BioMedCentral, 2015, 10 (1), ⟨10.1186/s40793-015-0103-0⟩, Standards in Genomic Sciences, 2015, 10 (1), ⟨10.1186/s40793-015-0103-0⟩
- Publisher :
- Springer Nature
-
Abstract
- Gemmata massiliana is a new Planctomycetes bacterium isolated from a hospital water network in France, using a new culture medium. It is an aerobic microorganism with optimal growth at pH 8, at 30 °C and salinity ≤ 1.25 % NaCl. G. massiliana is resistant to β-lactam antibiotics, due to lack of peptidoglycan in its cell wall.G. massiliana shares a 97 % 16S rRNA gene sequence similarity with the nearest species, Gemmata obscuriglobus; and 99 % similarity with unnamed soil isolates. Its 9,249,437-bp genome consists in one chromosome and no detectable plasmid and has a 64.07 % G + C content, 32.94 % of genes encoding for hypothetical proteins. The genome contains an incomplete 19.6-kb phage sequence, 26 CRISPRs, 3 CAS and 15 clusters of secondary metabolites. G. massiliana genome increases knowledge of a poorly known world of bacteria. Electronic supplementary material The online version of this article (doi:10.1186/s40793-015-0103-0) contains supplementary material, which is available to authorized users.
- Subjects :
- Genetics
Genome
biology
Planctomycetes
Culture
Chromosome
16S ribosomal RNA
biology.organism_classification
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Short Genome Report
Microbiology
chemistry.chemical_compound
Plasmid
chemistry
Gemmata obscuriglobus
Gemmata massiliana
Hospital water network
Peptidoglycan
[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
Gene
Gemmata
Bacteria
Subjects
Details
- Language :
- English
- ISSN :
- 19443277
- Volume :
- 10
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Standards in Genomic Sciences
- Accession number :
- edsair.doi.dedup.....97a221ec2d17b30d3bdc48ef9ac46e47
- Full Text :
- https://doi.org/10.1186/s40793-015-0103-0