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Bayesian analysis of growth curves using mixed models defined by stochastic differential equations

Authors :
Adeline Samson
Sophie Donnet
Jean-Louis Foulley
CEntre de REcherches en MAthématiques de la DEcision ( CEREMADE )
Université Paris-Dauphine-Centre National de la Recherche Scientifique ( CNRS )
Génétique Animale et Biologie Intégrative ( GABI )
Institut National de la Recherche Agronomique ( INRA ) -AgroParisTech
Mathématiques Appliquées à Paris 5 ( MAP5 - UMR 8145 )
Université Paris Descartes - Paris 5 ( UPD5 ) -Institut National des Sciences Mathématiques et de leurs Interactions-Centre National de la Recherche Scientifique ( CNRS )
CEntre de REcherches en MAthématiques de la DEcision (CEREMADE)
Université Paris Dauphine-PSL-Centre National de la Recherche Scientifique (CNRS)
Génétique Animale et Biologie Intégrative (GABI)
AgroParisTech-Institut National de la Recherche Agronomique (INRA)
Mathématiques Appliquées Paris 5 (MAP5 - UMR 8145)
Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Mathématiques et de leurs Interactions (INSMI)-Université Paris Descartes - Paris 5 (UPD5)
Centre National de la Recherche Scientifique (CNRS)-Université Paris Dauphine-PSL
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)
Université Paris Descartes - Paris 5 (UPD5)-Institut National des Sciences Mathématiques et de leurs Interactions (INSMI)-Centre National de la Recherche Scientifique (CNRS)
Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Source :
Biometrics, Biometrics, Wiley, 2010, 66 (3), pp.733-741. 〈10.1111/j.1541-0420.2009.01342.x〉, Biometrics, Wiley, 2010, 66 (3), pp.733-741. ⟨10.1111/j.1541-0420.2009.01342.x⟩
Publication Year :
2009

Abstract

International audience; Growth curve data consist of repeated measurements of a continuous growth process over time among a population of individuals. These data are classically analyzed by nonlinear mixed models. However, the standard growth functions used in this context prescribe monotone increasing growth and can fail to model unexpected changes in growth rates. We propose to model these variations using stochastic differential equations (SDEs) that are deduced from the standard deterministic growth function by adding random variations to the growth dynamics. A Bayesian inference of the parameters of these SDE mixed models is developed. In the case when the SDE has an explicit solution, we describe an easily implemented Gibbs algorithm. When the conditional distribution of the diusion process has no explicit form, we propose to approximate it using the Euler-Maruyama scheme. Finally, we suggest to validate the SDE approach via criteria based on the predictive posterior distribution. We illustrate the efficiency of our method using the Gompertz function to model data on chichen growth, the modeling being improved by the SDE approach.

Details

ISSN :
15410420 and 0006341X
Volume :
66
Issue :
3
Database :
OpenAIRE
Journal :
Biometrics
Accession number :
edsair.doi.dedup.....9c7c954cd32325e2bd6ed8ee6c518156