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Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines

Authors :
Tom Gillespie
I. Burak Ozyurt
Zeljana Babic
Maryann E. Martone
Anita Bandrowski
Amos Marc Bairoch
Amanda Capes-Davis
Source :
eLife, Babic, Zeljana; Capes-Davis, Amanda; Martone, Maryann E; Bairoch, Amos; Ozyurt, I Burak; Gillespie, Thomas H; et al.(2019). Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines. ELIFE, 8. doi: 10.7554/eLife.41676. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/8286k051, eLife, Vol. 8 (2019) P. e41676, eLife, Vol 8 (2019)
Publication Year :
2019
Publisher :
eScholarship, University of California, 2019.

Abstract

The use of misidentified and contaminated cell lines continues to be a problem in biomedical research. Research Resource Identifiers (RRIDs) should reduce the prevalence of misidentified and contaminated cell lines in the literature by alerting researchers to cell lines that are on the list of problematic cell lines, which is maintained by the International Cell Line Authentication Committee (ICLAC) and the Cellosaurus database. To test this assertion, we text-mined the methods sections of about two million papers in PubMed Central, identifying 305,161 unique cell-line names in 150,459 articles. We estimate that 8.6% of these cell lines were on the list of problematic cell lines, whereas only 3.3% of the cell lines in the 634 papers that included RRIDs were on the problematic list. This suggests that the use of RRIDs is associated with a lower reported use of problematic cell lines.

Details

ISSN :
2050084X
Database :
OpenAIRE
Journal :
eLife, Babic, Zeljana; Capes-Davis, Amanda; Martone, Maryann E; Bairoch, Amos; Ozyurt, I Burak; Gillespie, Thomas H; et al.(2019). Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines. ELIFE, 8. doi: 10.7554/eLife.41676. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/8286k051, eLife, Vol. 8 (2019) P. e41676, eLife, Vol 8 (2019)
Accession number :
edsair.doi.dedup.....9d6ffaa2acb50a010b28fa534e2ea67d
Full Text :
https://doi.org/10.7554/eLife.41676.