Additional file 1 of Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

Additional file 1: Supplementary material. Supplementary Methods. Supplementary Results. Figure S1. Gene fusions supported by one or more SV tools. Figure S2. Allele fraction of distinct fusions per SV type. Figure S3. Filtering predicted gene fusions to a high confidence subset. Figure S4. High gene fusion burden is associated with copy number instability. Figure S5. Osteosarcomas with TP53 gene fusion. Figure S6. Potentially pathogenic gene fusion candidates in individual patients. Figure S7. HOXA9 gene expression and gene fusion status. Figure S8. Association between ZBTB20 gene expression and survival. Figure S9. Co-occurring fusions and SNVs indicative of TSG disruption. Figure S10. MTAP--CDKN2B-AS1 fusions and associated expression changes of CDKNB-AS1 and CDKN2A. References for supplementary methods and results.