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Description of Algoriphagus taiwanensis sp. nov., a xylanolytic bacterium isolated from surface seawater, and emended descriptions of Algoriphagus mannitolivorans, Algoriphagus olei, Algoriphagus aquatilis and Algoriphagus ratkowskyi
- Source :
- Antonie van Leeuwenhoek. 106(5)
- Publication Year :
- 2014
-
Abstract
- A novel, Gram-stain negative, strictly aerobic, oval or rod-shaped, red-pigmented, non-spore-forming xylanolytic bacterial strain, designated CC-PR-82T, was isolated from surface seawater of Pingtung coast, Taiwan, and characterized by polyphasic taxonomy. Strain CC-PR-82T shared highest pairwise 16S rRNA gene sequence similarity to Algoriphagus mannitolivorans IMSNU 14012T (97.0 %) followed by ‘A. boseongensis’ BS-R1T (96.5 %) and A. olei CC-Hsuan-617T (95.6 %), whereas other (n = 26) Algoriphapus species shared 95.6–92.6 % sequence similarities. The novel strain further established a distinct phyletic lineage tightly associated with Algoriphagus species. The DNA–DNA hybridization value obtained between CC-PR-82T and A. mannitolivorans DSM 15301T was 29.0 % (33.4 % reciprocal using A. mannitolivorans DSM 15301T probe). The major (>5 % of total) fatty acids were identified as iso-C15:0, C16:1 ω6c and/or C16:1 ω7c, iso-C16:0, iso-C17:1 ω9c and/or C16:0 10-methyl, anteiso-C15:0 and C17:1 ω6c. Polar lipids included major amounts of an unidentified aminolipid and an unidentified lipid; moderate amounts of phosphatidylethanolamine, phosphatidylserine and an unidentified aminolipid; trace amounts of an unidentified phospholipid, an unidentified lipid and an unidentified glycolipid. The DNA G+C content was determined to be 42.3 mol%. Menaquinone-7 was the sole respiratory quinone. Based on the polyphasic characteristics, that are in line with those of Algoriphagus species, in addition to distinguishing phylogenetic and phenotypic features, strain CC-PR-82T appears to represent a novel species of the genus Algoriphagus, for which the name Algoriphagus taiwanensis sp. nov. (type strain CC-PR-82T = JCM 19755T = BCRC 80746T) is proposed. In addition, emended descriptions of the species A. mannitolivorans, A. aquatilis, A. olei and A. ratkowskyi are also proposed.
- Subjects :
- DNA, Bacterial
Sequence analysis
Molecular Sequence Data
Taiwan
Microbiology
DNA, Ribosomal
Cytosol
Microscopy, Electron, Transmission
Phylogenetics
RNA, Ribosomal, 16S
Botany
Cluster Analysis
Seawater
Molecular Biology
Phospholipids
Phylogeny
Base Composition
biology
Phylogenetic tree
Bacteroidetes
Fatty Acids
Nucleic Acid Hybridization
Vitamin K 2
General Medicine
Sequence Analysis, DNA
Ribosomal RNA
biology.organism_classification
16S ribosomal RNA
Aerobiosis
Bacterial Typing Techniques
Algoriphagus
Taxonomy (biology)
Xylans
Bacteria
Subjects
Details
- ISSN :
- 15729699
- Volume :
- 106
- Issue :
- 5
- Database :
- OpenAIRE
- Journal :
- Antonie van Leeuwenhoek
- Accession number :
- edsair.doi.dedup.....a0de40f1e6bd61d90c1d5a910c6bcf30