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The UCSC Genome Browser database: 2018 update

Authors :
Brian T. Lee
Robert M. Kuhn
Christopher Eisenhart
Kate R. Rosenbloom
Cath Tyner
Donna Karolchik
Brian J. Raney
Jonathan Casper
David Gibson
Ann S. Zweig
Maximilian Haeussler
Jairo Navarro Gonzalez
Matthew L. Speir
Mark Diekhans
Luvina Guruvadoo
Galt P. Barber
W. James Kent
David Haussler
Joel Armstrong
Chris Villarreal
Ian T. Fiddes
Christopher Lee
Angie S. Hinrichs
Hiram Clawson
Source :
Nucleic acids research, vol 46, iss D1, Nucleic Acids Research
Publication Year :
2018
Publisher :
eScholarship, University of California, 2018.

Abstract

The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.

Details

Database :
OpenAIRE
Journal :
Nucleic acids research, vol 46, iss D1, Nucleic Acids Research
Accession number :
edsair.doi.dedup.....a15f7cfc48ea2734282b08d6ae3a909b