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The drug target genes show higher evolutionary conservation than non-target genes
- Source :
- Oncotarget
- Publication Year :
- 2015
- Publisher :
- Impact Journals LLC, 2015.
-
Abstract
- Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug target genes. We compared the evolutionary conservation between human drug target genes and non-target genes by combining both the evolutionary features and network topological properties in human protein-protein interaction network. The evolution rate, conservation score and the percentage of orthologous genes of 21 species were included in our study. Meanwhile, four topological features including the average shortest path length, betweenness centrality, clustering coefficient and degree were considered for comparison analysis. Then we got four results as following: compared with non-drug target genes, 1) drug target genes had lower evolutionary rates; 2) drug target genes had higher conservation scores; 3) drug target genes had higher percentages of orthologous genes and 4) drug target genes had a tighter network structure including higher degrees, betweenness centrality, clustering coefficients and lower average shortest path lengths. These results demonstrate that drug target genes are more evolutionarily conserved than non-drug target genes. We hope that our study will provide valuable information for other researchers who are interested in evolutionary conservation of drug targets.
- Subjects :
- 0301 basic medicine
Linkage disequilibrium
Databases, Factual
Computational biology
Biology
Models, Biological
drug target
Linkage Disequilibrium
Conserved sequence
Evolution, Molecular
03 medical and health sciences
Betweenness centrality
Interaction network
evolutionary conservation
Humans
Protein Interaction Maps
Cluster analysis
Gene
Conserved Sequence
Clustering coefficient
Genetics
Genome, Human
030104 developmental biology
Gene Ontology
Oncology
Genes
Pharmaceutical Preparations
Human genome
topological properties
Research Paper
Subjects
Details
- Language :
- English
- ISSN :
- 19492553
- Volume :
- 7
- Issue :
- 4
- Database :
- OpenAIRE
- Journal :
- Oncotarget
- Accession number :
- edsair.doi.dedup.....a32b8249cd0bff1a049556c4ff7565f6