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Comparative analysis of complete mitochondrial genomes with Cerithioidea and molecular phylogeny of the freshwater snail, Semisulcospira gottschei (Caenogastropoda, Cerithioidea)
- Source :
- International journal of biological macromolecules. 135
- Publication Year :
- 2019
-
Abstract
- In this study, we determined the complete mitochondrial genome (mt genome) of Semisulcospira gottschei for the first time and then compared it with the mt genome of species belonging to Cerithioidea. The mt genome consists of 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and non-coding region with a total length of 16,101 bp. The type of constitutive genes and the direction of the coding strand which appeared in the mt genome were the same as the ones observed in Cerithioidea except for the tRNA-Q and tRNA-R positions. The S. gottschei mt genome had a non-coding region with an AT-rich loop between tRNA-F and tRNA-C regions. In regard to molecular phylogeny, two types of analysis were performed to confirm the introgressive hybridization of S. gottschei and to identify the phylogenetic location among the species in Caenogastropoda. As a result, S. gottschei used in this study belonged to the same clade as other non-introgressed S. gottschei. As for the molecular phylogenic analysis of species belonging to Caenogastropoda, S. gottschei was found to be the closest to S. coreana taxonomically and to be included in Cerithioidea.
- Subjects :
- Mitochondrial DNA
Gastropoda
02 engineering and technology
Biochemistry
Genome
03 medical and health sciences
Cerithioidea
Structural Biology
Animals
Molecular Biology
Phylogeny
030304 developmental biology
0303 health sciences
Caenogastropoda
Phylogenetic tree
biology
Semisulcospira gottschei
Computational Biology
High-Throughput Nucleotide Sequencing
Molecular Sequence Annotation
General Medicine
Genomics
Sequence Analysis, DNA
Ribosomal RNA
021001 nanoscience & nanotechnology
biology.organism_classification
Genes, Mitochondrial
Evolutionary biology
Molecular phylogenetics
Genome, Mitochondrial
Nucleic Acid Conformation
0210 nano-technology
Subjects
Details
- ISSN :
- 18790003
- Volume :
- 135
- Database :
- OpenAIRE
- Journal :
- International journal of biological macromolecules
- Accession number :
- edsair.doi.dedup.....a631292917dacf18987efd23b25646f9