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The complete chloroplast genome sequence of Cynanchum auriculatum Royle ex Wight (Apocynaceae)
- Source :
- Mitochondrial DNA Part A. 27:4549-4550
- Publication Year :
- 2015
- Publisher :
- Informa UK Limited, 2015.
-
Abstract
- Cynanchum auriculatum is a climbing vine belonging to the Apocynaceae family and shows very similar morphology to Cynanchum wilfordii, a medicinal plant. The complete chloroplast genome of C. auriculatum was generated by de novo assembly using the small amount of whole genome sequencing data. The chloroplast genome of C. auriculatum was 160 840 bp in length and consisted of four distinct regions, such as large single copy region (91 973 bp), small single copy region (19 667 bp), and a pair of inverted repeat regions (24 600 bp). The overall GC contents of the chloroplast genome were 37.8%. A total of 114 genes were predicted and included 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that C. auriculatum is most closely related to Cynanchum wilfordii, a medicinal plant.
- Subjects :
- 0301 basic medicine
Chloroplasts
Inverted repeat
Sequence assembly
Genome
Open Reading Frames
03 medical and health sciences
RNA, Transfer
Botany
Genetics
Genome, Chloroplast
Molecular Biology
Gene
Phylogeny
Plant Proteins
Whole genome sequencing
Base Composition
Cynanchum auriculatum
biology
Phylogenetic tree
Inverted Repeat Sequences
DNA, Chloroplast
food and beverages
Sequence Analysis, DNA
Ribosomal RNA
biology.organism_classification
Apocynaceae
030104 developmental biology
RNA, Ribosomal
Subjects
Details
- ISSN :
- 24701408 and 24701394
- Volume :
- 27
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA Part A
- Accession number :
- edsair.doi.dedup.....a867a429776e2248c35e4113f5932c90
- Full Text :
- https://doi.org/10.3109/19401736.2015.1101557