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The complete chloroplast genome sequence of Cynanchum auriculatum Royle ex Wight (Apocynaceae)

Authors :
Tae-Jin Yang
Junki Lee
Young Hun Shim
Kyu-Yeob Kim
Sang-Choon Lee
Hyun-Seung Park
Woojong Jang
Kyung-Hee Kim
Sang Hyun Sung
Rack Seon Seong
Source :
Mitochondrial DNA Part A. 27:4549-4550
Publication Year :
2015
Publisher :
Informa UK Limited, 2015.

Abstract

Cynanchum auriculatum is a climbing vine belonging to the Apocynaceae family and shows very similar morphology to Cynanchum wilfordii, a medicinal plant. The complete chloroplast genome of C. auriculatum was generated by de novo assembly using the small amount of whole genome sequencing data. The chloroplast genome of C. auriculatum was 160 840 bp in length and consisted of four distinct regions, such as large single copy region (91 973 bp), small single copy region (19 667 bp), and a pair of inverted repeat regions (24 600 bp). The overall GC contents of the chloroplast genome were 37.8%. A total of 114 genes were predicted and included 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that C. auriculatum is most closely related to Cynanchum wilfordii, a medicinal plant.

Details

ISSN :
24701408 and 24701394
Volume :
27
Database :
OpenAIRE
Journal :
Mitochondrial DNA Part A
Accession number :
edsair.doi.dedup.....a867a429776e2248c35e4113f5932c90
Full Text :
https://doi.org/10.3109/19401736.2015.1101557