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The pitfalls of molecular species identification : A case study within the genus Pratylenchus (Nematoda: Pratylenchidae)
- Source :
- Nematology 19 (2017) 10, Nematology, 19(10), 1179-1199
- Publication Year :
- 2017
-
Abstract
- Comprehensive morphological and molecular analyses revealed that published ITS sequences of the economically important plant-parasitic nematodePratylenchus goodeyiare actually sequences from distantly free-living bacterivorous ‘cephalobids’. We demonstrated that this incorrect labelling resulted in a cascade of erroneous interpretations, as shown by the reports of ‘P. goodeyi’ on banana in China and on cotton in India. This clearly illustrates the risk of mislabelled sequences in public databases. Other mislabelledPratylenchuscases are discussed to illustrate that this is not an isolated case. Herein,P. lentisn. syn. is considered a junior synonym ofP. pratensiswhileP. flakkensiswas for the first time linked to DNA sequences using topotype material. As taxonomic expertise is decreasing and sequence-based identification is growing rapidly, the highlighted problem may yet increase and a strong link between morphology and DNA sequences will be of crucial importance in order to prevent, or at least minimise, sequence-based misidentifications.
- Subjects :
- 0301 basic medicine
new synonym
topotypes
Acrobeloides cf. nanus
Pratylenchus pratensis
Pratylenchus goodeyi
03 medical and health sciences
Genus
Botany
diagnostics
Pratylenchus flakkensis
Laboratorium voor Nematologie
Ecology, Evolution, Behavior and Systematics
molecular phylogeny
Pratylenchidae
biology
mislabelled sequences
biology.organism_classification
Pratylenchus lentis n. syn
030104 developmental biology
Evolutionary biology
Molecular phylogenetics
Identification (biology)
Pratylenchus
Laboratory of Nematology
Agronomy and Crop Science
Subjects
Details
- Language :
- English
- ISSN :
- 13885545
- Volume :
- 19
- Issue :
- 10
- Database :
- OpenAIRE
- Journal :
- Nematology
- Accession number :
- edsair.doi.dedup.....aea448762253c04f852891b0a9d99bfb
- Full Text :
- https://doi.org/10.1163/15685411-00003117