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The pitfalls of molecular species identification : A case study within the genus Pratylenchus (Nematoda: Pratylenchidae)

Authors :
Marjolein Couvreur
Wim Bert
Gerrit Karssen
Lieven Waeyenberge
Toon Janssen
Medical Genetics
Source :
Nematology 19 (2017) 10, Nematology, 19(10), 1179-1199
Publication Year :
2017

Abstract

Comprehensive morphological and molecular analyses revealed that published ITS sequences of the economically important plant-parasitic nematodePratylenchus goodeyiare actually sequences from distantly free-living bacterivorous ‘cephalobids’. We demonstrated that this incorrect labelling resulted in a cascade of erroneous interpretations, as shown by the reports of ‘P. goodeyi’ on banana in China and on cotton in India. This clearly illustrates the risk of mislabelled sequences in public databases. Other mislabelledPratylenchuscases are discussed to illustrate that this is not an isolated case. Herein,P. lentisn. syn. is considered a junior synonym ofP. pratensiswhileP. flakkensiswas for the first time linked to DNA sequences using topotype material. As taxonomic expertise is decreasing and sequence-based identification is growing rapidly, the highlighted problem may yet increase and a strong link between morphology and DNA sequences will be of crucial importance in order to prevent, or at least minimise, sequence-based misidentifications.

Details

Language :
English
ISSN :
13885545
Volume :
19
Issue :
10
Database :
OpenAIRE
Journal :
Nematology
Accession number :
edsair.doi.dedup.....aea448762253c04f852891b0a9d99bfb
Full Text :
https://doi.org/10.1163/15685411-00003117