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Comprehensive assessment gene signatures for clear cell renal cell carcinoma prognosis
- Source :
- Medicine
- Publication Year :
- 2018
- Publisher :
- Ovid Technologies (Wolters Kluwer Health), 2018.
-
Abstract
- There are many prognostic gene signature models in clear cell renal cell carcinoma (ccRCC). However, different results from various methods and samples are hard to contribute to clinical practice. It is necessary to develop a robust gene signature for improving clinical practice in ccRCC. A method was proposed to integrate least absolute shrinkage and selection operator and multiple Cox regression to obtain mRNA and microRNA signature from the cancer genomic atlas database for predicting prognosis of ccRCC. The gene signature model consisted by 5 mRNAs and 1 microRNA was identified. Prognosis index (PI) model was constructed from RNA expression and median value of PI is used to classified patients into high- and low-risk groups. The results showed that high-risk patients showed significantly decrease survival comparison with low-risk groups [hazard ratio (HR) =7.13, 95% confidence interval = 3.71–13.70, P
- Subjects :
- Male
0301 basic medicine
Oncology
medicine.medical_specialty
gene regulatory network
Kaplan-Meier Estimate
clear cell renal cell carcinoma
Diagnostic Accuracy Study
Transcriptome
03 medical and health sciences
0302 clinical medicine
Internal medicine
Databases, Genetic
microRNA
Biomarkers, Tumor
medicine
Humans
RNA, Messenger
Carcinoma, Renal Cell
Gene
Aged
Receiver operating characteristic
Proportional hazards model
business.industry
Gene Expression Profiling
Hazard ratio
Reproducibility of Results
General Medicine
Middle Aged
Gene signature
Prognosis
medicine.disease
Kidney Neoplasms
Gene Expression Regulation, Neoplastic
MicroRNAs
Clear cell renal cell carcinoma
030104 developmental biology
ROC Curve
030220 oncology & carcinogenesis
Female
least absolute shrinkage and selection operator
business
Research Article
Cox regression
Subjects
Details
- ISSN :
- 15365964 and 00257974
- Volume :
- 97
- Database :
- OpenAIRE
- Journal :
- Medicine
- Accession number :
- edsair.doi.dedup.....b0344299c2881145b36c982de9788492
- Full Text :
- https://doi.org/10.1097/md.0000000000012679