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Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

Authors :
Adriaenssens, Evelien M
Sullivan, Matthew B
Knezevic, Petar
van Zyl, Leonardo J
Sarkar, B L
Dutilh, Bas E
Alfenas-Zerbini, Poliane
Łobocka, Małgorzata
Tong, Yigang
Brister, James Rodney
Moreno Switt, Andrea I
Klumpp, Jochen
Aziz, Ramy Karam
Barylski, Jakub
Uchiyama, Jumpei
Kropinski, Andrew M
Petty, Nicola K
Clokie, Martha R J
Kushkina, Alla I
Morozova, Vera V
Duffy, Siobain
Gillis, Annika
Rumnieks, Janis
Kurtböke, İpek
Chanishvili, Nina
Goodridge, Lawrence
Wittmann, Johannes
Lavigne, Rob
Jang, Ho Bin
Prangishvili, David
Enault, Francois
Turner, Dann
Poranen, Minna M
Oksanen, Hanna M
Krupovic, Mart
Sub Bioinformatics
Theoretical Biology and Bioinformatics
Quadram Institute
Biotechnology and Biological Sciences Research Council (BBSRC)
Department of Civil, Environmental and Geodetic Engineering [Columbus, USA] (CEGE)
Ohio State University [Columbus] (OSU)
University of Novi Sad
Institute for Microbial Biotechnology and Metagenomics [Cape Town, South Africa] (IMBM)
University of the Western Cape (UWC)
National Institute of Cholera and Enteric Diseases
Theoretical Biology and Bioinformatics [Utrecht, The Netherlands]
Utrecht University [Utrecht]
Radboud University Medical Center [Nijmegen]
Universidade Federal de Viçosa = Federal University of Viçosa (UFV)
Institute of Biochemistry & Biophysics
Polish Academy of Sciences (PAN)
Beijing University of Chemical Technology
National Library of Medicine (NLM)
National Institutes of Health [Bethesda] (NIH)-National Center for Biotechnology Information (NCBI)
Universidad Andrés Bello [Santiago] (UNAB)
Institute of Food, Nutrition and Health [Zurich, Suisse] (IFNH)
Department of Health Sciences and Technology [ETH Zürich] (D-HEST)
Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich)- Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich)
Cairo University
Adam Mickiewicz University in Poznań (UAM)
Azabu University
San Diego State University (SDSU)
University of Guelph
Ontario Veterinary College [Univ. Guelph, Canada]
iThree Institute
University of Technology Sydney (UTS)
University of Leicester
D.K. Zabolotny Institute of Microbiology and Virology [Kyiv, Ukraine]
National Academy of Sciences of Ukraine (NASU)
Institute of Chemical Biology and Fundamental Medicine [Novosibirsk, Russia] (ICBFM SB RAS)
Siberian Branch of the Russian Academy of Sciences (SB RAS)
Rutgers University [Newark]
Rutgers University System (Rutgers)
Imperial College London
Latvian Biomedical Research and Study Centre [Rīga]
University of the Sunshine Coast (USC)
George Eliava Institute of Bacteriophages, Microbiology and Virology [Tbilisi, Georgia]
Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH / Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (DSMZ)
Department of Biosystems (BIOSYST)
Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven)
Virologie des archées - Archaeal Virology
Institut Pasteur [Paris] (IP)
Ivane Javakhishvili Tbilisi State University (TSU)
Laboratoire Microorganismes : Génome et Environnement (LMGE)
Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS)
Faculty of Health and Applied Sciences [Bristol, UK]
University of the West of England [Bristol] (UWE Bristol)
Faculty of Biological and Environmental Sciences [Helsinki]
Helsingin yliopisto = Helsingfors universitet = University of Helsinki
This research was funded by the BBSRC Institute Strategic Programme Gut Microbes and Health BB/R012490/1 and its constituent project(s) BBS/E/F/000PR10353. B.E.D. was supported by the Netherlands Organization for Scientific Research (NWO), Vidi Grant 864.14.004. R.A.E was supported by Grant MCB-1330800 from the National Science Foundation. J.R.B. was supported by the Intramural Research Program of the National Institutes of Health, National Library of Medicine. R.L. is a member of the PhageBiotics Research Community, supported by FWO Vlaanderen. M.M.P. was supported by the Academy of Finland (272507). H.M.O. was supported by University of Helsinki funding for Instruct-F1 research infrastructure.
The views and conclusions contained in this document are those of the authors and should not be interpreted as necessarily representing the official policies of their organizations. E.M.A gratefully acknowledges the support of the UK Biotechnology and Biological Sciences Research Council (BBSRC).
UCL - SST/ELI/ELIM - Applied Microbiology
University of the Western Cape
Universidade Federal de Vicosa (UFV)
Universidad Andrés Bello - UNAB (CHILE)
Institut Pasteur [Paris]
University of Helsinki
Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])
Source :
Archives of Virology, Archives of Virology, 2020, 165 (5), pp.1253-1260. ⟨10.1007/s00705-020-04577-8⟩, Archives of Virology, 165. Springer Wien, Archives of Virology, Vol. 165, no.5, p. 1253-1260 (2020), Archives of Virology, 165, 1253-1260, Archives of Virology, Springer Verlag, 2020, 165 (5), pp.1253-1260. ⟨10.1007/s00705-020-04577-8⟩, Archives of Virology, 165, 5, pp. 1253-1260
Publication Year :
2020
Publisher :
HAL CCSD, 2020.

Abstract

International audience; This article is a summary of the activities of the ICTV's Bacterial and Archaeal Viruses Subcommittee for the years 2018 and 2019. Highlights include the creation of a new order, 10 families, 22 subfamilies, 424 genera and 964 species. Some of our concerns about the ICTV's ability to adjust to and incorporate new DNA- and protein-based taxonomic tools are discussed.

Subjects

Subjects :
06 Biological Sciences, 07 Agricultural and Veterinary Sciences, 11 Medical and Health Sciences
Archaeal Viruses
0303 health sciences
MESH: Bacteriophages/classification
Bacteria
030306 microbiology
MESH: Bacteria/virology
Coronacrisis-Taverne
General Medicine
Classification
MESH: Archaeal Viruses/classification
Archaea
03 medical and health sciences
All institutes and research themes of the Radboud University Medical Center
Virology
[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology
Tumours of the digestive tract Radboud Institute for Molecular Life Sciences [Radboudumc 14]
Bacteriophages
MESH: Archaea/virology
MESH: Classification/methods
030304 developmental biology

Details

Language :
English
ISSN :
03048608 and 14328798
Database :
OpenAIRE
Journal :
Archives of Virology, Archives of Virology, 2020, 165 (5), pp.1253-1260. ⟨10.1007/s00705-020-04577-8⟩, Archives of Virology, 165. Springer Wien, Archives of Virology, Vol. 165, no.5, p. 1253-1260 (2020), Archives of Virology, 165, 1253-1260, Archives of Virology, Springer Verlag, 2020, 165 (5), pp.1253-1260. ⟨10.1007/s00705-020-04577-8⟩, Archives of Virology, 165, 5, pp. 1253-1260
Accession number :
edsair.doi.dedup.....b384095c9095d92498d0731c0958a5f9
Full Text :
https://doi.org/10.1007/s00705-020-04577-8⟩
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